Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b06
         (451 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0466 - 24602715-24603964,24605762-24605944,24606381-246072...    33   0.14 
01_07_0061 + 40818077-40818241,40818494-40818716,40819015-408192...    29   2.3  
05_01_0520 - 4492182-4492780,4496886-4497951                           28   3.0  
07_01_0117 + 894314-896677                                             27   7.0  
12_02_0586 + 20831933-20832378,20832434-20833031,20833813-208339...    27   9.2  
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275...    27   9.2  

>03_05_0466 -
           24602715-24603964,24605762-24605944,24606381-24607286,
           24609446-24609516,24609737-24609846,24610073-24610108,
           24610211-24610278,24610655-24610760,24610850-24610997,
           24611091-24611218,24611319-24611454,24611924-24612072
          Length = 1096

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 339 CILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHLQLHCNFSNMY 208
           C+++  T PCP  +      P+R  N  CNTS L  +C    ++
Sbjct: 23  CLIHPSTPPCPVCSHSLSLPPERNPNYRCNTSLLIDYCQHDGIH 66


>01_07_0061 +
           40818077-40818241,40818494-40818716,40819015-40819263,
           40819455-40819505,40819611-40819871,40819994-40820046,
           40820234-40820348,40820475-40820696,40821280-40822253
          Length = 770

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +3

Query: 135 IMHLTA--NVLLVPNA--LKKRDVKYIYNTYLKNYSVIEGAMC 251
           ++HL    NV+  PNA  LKK  V Y+YN   KN+   E   C
Sbjct: 713 VVHLLGETNVVAEPNADFLKKIIVDYVYNFIRKNFRQPEKITC 755


>05_01_0520 - 4492182-4492780,4496886-4497951
          Length = 554

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 225 YSVIEGAMCCNGDCLAVVVLDRNQLQNTDMEVLESLEYTSD 347
           Y V +G +  + DCL  V  DR+ L    + VLE  +Y+SD
Sbjct: 257 YGVDDGFIDVSQDCLCFVNTDRDDLYKLSVWVLE--DYSSD 295


>07_01_0117 + 894314-896677
          Length = 787

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 399 CCNYQXSH-ILFCITIQRCH*CILNFPTLPCPCF 301
           CC     H +L+C+       C++ +PT+ CPC+
Sbjct: 469 CCYKPVFHFMLYCVR------CMMRWPTICCPCY 496


>12_02_0586 +
           20831933-20832378,20832434-20833031,20833813-20833986,
           20834208-20834570
          Length = 526

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +3

Query: 243 AMCCNGDCLAVVVLD--RNQLQNTDMEVLESLE-YTSDNVELLCKKVCVI 383
           A CC  +CL++ + D  RNQ  N+ M + +  E +  + + L C ++  I
Sbjct: 391 AKCCKAECLSINISDQGRNQCVNS-MCICDQPEGWEKETISLECLRIVEI 439


>03_05_0776 +
           27625122-27625415,27627226-27627273,27627455-27627514,
           27627633-27627802,27627901-27627973,27628096-27628161,
           27628262-27628345,27628681-27628758,27629009-27629092,
           27629835-27630137,27630227-27630397,27630971-27631161,
           27631284-27631686,27632246-27632497,27632577-27633077,
           27633181-27633278,27633400-27633499,27633722-27633867,
           27633973-27634138
          Length = 1095

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -1

Query: 244 APSITL*FFKYVL*MYFTSRFLSA 173
           AP+IT     YVL M+FT+ F+SA
Sbjct: 9   APAITKFLKPYVLKMHFTNNFVSA 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,984,414
Number of Sequences: 37544
Number of extensions: 244230
Number of successful extensions: 575
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)