Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b03
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541...   249   1e-66
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347...   244   3e-65
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126...   148   3e-36
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746...    51   6e-07
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334...    30   1.1  
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353...    29   3.4  
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880     28   4.5  
04_01_0440 + 5746474-5746662,5746895-5747251                           28   4.5  
01_01_0357 - 2816650-2817897                                           27   7.9  

>01_06_1253 -
           35753546-35753686,35753759-35753885,35753970-35754125,
           35754761-35754853,35757132-35757265,35757339-35757465,
           35757550-35757705,35758321-35758325
          Length = 312

 Score =  249 bits (609), Expect = 1e-66
 Identities = 112/148 (75%), Positives = 128/148 (86%)
 Frame = +2

Query: 26  CRAIQMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKV 205
           C ++ MGK RG+   RK   HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVLEK+
Sbjct: 166 CPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 224

Query: 206 GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDI 385
           G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDI
Sbjct: 225 GIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDI 284

Query: 386 PGVRFKVVKVANVSLLALYKEKKERPRS 469
           PGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 285 PGVRFKVVKVSGVSLLALFKEKKEKPRS 312



 Score =  241 bits (589), Expect = 4e-64
 Identities = 109/141 (77%), Positives = 123/141 (87%)
 Frame = +2

Query: 41  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 220
           MGK RG+   RK   HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 221 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 400
           QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60  QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119

Query: 401 KVVKVANVSLLALYKEKKERP 463
           KVVKV+ VSLLAL+KEKKE+P
Sbjct: 120 KVVKVSGVSLLALFKEKKEKP 140


>03_06_0466 -
           34134138-34134278,34134355-34134481,34134558-34134713,
           34135831-34135835
          Length = 142

 Score =  244 bits (598), Expect = 3e-65
 Identities = 111/143 (77%), Positives = 125/143 (87%)
 Frame = +2

Query: 41  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 220
           MGK RG+   RK   HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 221 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 400
           QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60  QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119

Query: 401 KVVKVANVSLLALYKEKKERPRS 469
           KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142


>10_06_0053 -
           10110617-10111271,10112023-10112417,10112565-10112650,
           10112973-10113021,10114164-10114290,10114372-10114526,
           10114730-10114948
          Length = 561

 Score =  148 bits (359), Expect = 3e-36
 Identities = 67/102 (65%), Positives = 78/102 (76%)
 Frame = +2

Query: 47  KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 226
           K  G+   RK   HRR QRWADK +KK+H G +WK  PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 74  KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132

Query: 227 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 352
           NSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+   V G
Sbjct: 133 NSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174


>05_03_0026 +
           7466017-7466034,7466340-7466405,7466572-7466833,
           7467254-7467294
          Length = 128

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 22/27 (81%), Positives = 25/27 (92%)
 Frame = +2

Query: 332 DEVLVAGFGRKGHAVGDIPGVRFKVVK 412
           DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67  DEVLISGFGHKGHAVGDIRGVRFEVVK 93


>12_01_0425 +
           3347804-3348284,3348544-3348759,3349038-3349588,
           3349752-3349815,3349915-3349975,3350271-3350409,
           3350561-3350677,3350794-3350971,3351218-3351828
          Length = 805

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = -2

Query: 366 PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFPFLMSCTRTHLRMAELGCLA-STPTFSRT 190
           P    P+T   S S+  F  P   T+A +  PF  + +            A STP F+ +
Sbjct: 277 PFAAKPSTGFGSTSTTLFNSPFNNTSAASSSPFASTTSIPLFTQTSSSLFANSTPGFASS 336

Query: 189 MPF 181
            PF
Sbjct: 337 SPF 339


>02_05_0568 -
           30034280-30034393,30034888-30035163,30035246-30035371,
           30035595-30035753,30035893-30036063,30036374-30036493,
           30036565-30036924,30038800-30039686,30039790-30040363,
           30041379-30041507,30042423-30042494,30042572-30042728,
           30042974-30043023,30043569-30044327
          Length = 1317

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -2

Query: 381 SPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFP 271
           +PT  P  PNP  ST    SM F+ PS    A   FP
Sbjct: 3   TPTGNP-NPNPNPSTPFEVSMLFKPPSNAPAAAPIFP 38


>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
          Length = 898

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 363 LRPNPATSTSSFSSMWFRQPSRGT 292
           L P+ +T T +FS  WFR PS+ T
Sbjct: 196 LPPDGSTVTIAFSERWFRIPSKWT 219


>04_01_0440 + 5746474-5746662,5746895-5747251
          Length = 181

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 100 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 198
           A+GG      P GY+ +G PF  C    KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159


>01_01_0357 - 2816650-2817897
          Length = 415

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 380 HRRRDLYDRIPPLVLRRFLRCGLGNRHGG 294
           H+ ++  DR+PPLVLR   + G   R  G
Sbjct: 175 HQAQEHQDRVPPLVLRHAQQLGRARRVPG 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,347,708
Number of Sequences: 37544
Number of extensions: 398076
Number of successful extensions: 1088
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)