Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b03
         (568 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...   239   7e-64
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...   231   3e-61
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam...    34   0.076
At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to ...    28   5.0  
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein       28   5.0  
At1g32960.1 68414.m04059 subtilase family protein contains simil...    28   5.0  
At1g32940.1 68414.m04057 subtilase family protein contains simil...    28   5.0  
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P...    27   8.7  

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score =  239 bits (586), Expect = 7e-64
 Identities = 110/143 (76%), Positives = 125/143 (87%)
 Frame = +2

Query: 41  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 220
           MGK RG+   RK    R  QRWADK++KK+H+G +WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 221 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 400
           QPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 119

Query: 401 KVVKVANVSLLALYKEKKERPRS 469
           KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score =  231 bits (564), Expect = 3e-61
 Identities = 108/143 (75%), Positives = 122/143 (85%)
 Frame = +2

Query: 41  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 220
           MGK RG+   RK    R  QRWADK +KK++ G +WK  PF  +SHAKGIVLEK+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAK 59

Query: 221 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 400
           QPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 119

Query: 401 KVVKVANVSLLALYKEKKERPRS 469
           KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142


>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
           protein
          Length = 125

 Score = 33.9 bits (74), Expect = 0.076
 Identities = 24/65 (36%), Positives = 38/65 (58%)
 Frame = +2

Query: 218 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVR 397
           K+PNSA RK  +V+L  N   + A +P +G  ++ +E+  VL+ G GR    V D PGV+
Sbjct: 43  KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRG-GR----VKDSPGVK 94

Query: 398 FKVVK 412
              ++
Sbjct: 95  SHCIR 99


>At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 289

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 404 VVKVANVSLLALYKEKKERPRS*VYMVISDLLSGSALFI 520
           VV++  +SL   Y  KKE+  +  +++  D+L   A+F+
Sbjct: 80  VVQIVYISLFFFYAPKKEKTLTVKFVLFVDVLGFGAIFV 118


>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
          Length = 356

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 357 PNPATSTSSFSSMWFRQP-SRGTNAVTFFPFLMSCTR 250
           P PA+ST SFSS     P S     ++F P L + TR
Sbjct: 300 PKPASSTISFSSSETDNPYSHSEEVISFCPSLSNNTR 336


>At1g32960.1 68414.m04059 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
          Length = 777

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 104 WADKEFKKAHMGTKWKANPFGGASHAKG 187
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602


>At1g32940.1 68414.m04057 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 774

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 104 WADKEFKKAHMGTKWKANPFGGASHAKG 187
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599


>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
           At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
           At1g25886, At4g03300
          Length = 1312

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 266 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 427
           K  KK +  VP+      + E D+V   GF  K   V D+P  + +VV +  NVS
Sbjct: 819 KEEKKSSPKVPKKVKNQLVYEQDDVHPHGFKAKTVLVPDVPNQQIEVVIRAENVS 873


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,518,756
Number of Sequences: 28952
Number of extensions: 297052
Number of successful extensions: 748
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)