Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10b02
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0263 + 2136858-2137331 191 4e-49
12_01_0323 - 2459854-2460306 190 8e-49
11_01_0317 - 2365493-2365786,2365825-2365953 152 2e-37
06_03_1161 - 28089177-28089359,28089473-28089700,28089776-280898... 29 3.2
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165... 28 5.6
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 28 5.6
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 27 7.4
02_05_0082 + 25679089-25679253,25680998-25681030,25681758-25682579 27 7.4
>01_01_0263 + 2136858-2137331
Length = 157
Score = 191 bits (465), Expect = 4e-49
Identities = 93/137 (67%), Positives = 116/137 (84%)
Frame = +1
Query: 52 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 231
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 232 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 411
YKG++ GKV+QVYR+++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILD
Sbjct: 61 SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 119
Query: 412 RRAKGRLAALGKDKGKY 462
R+A+GR A K KGK+
Sbjct: 120 RKARGR--AADKAKGKF 134
>12_01_0323 - 2459854-2460306
Length = 150
Score = 190 bits (462), Expect = 8e-49
Identities = 93/137 (67%), Positives = 115/137 (83%)
Frame = +1
Query: 52 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 231
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 232 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 411
YKG++ GKV+QVYR+++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILD
Sbjct: 61 SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 119
Query: 412 RRAKGRLAALGKDKGKY 462
R+A GR A K KGK+
Sbjct: 120 RKASGR--AADKAKGKF 134
>11_01_0317 - 2365493-2365786,2365825-2365953
Length = 140
Score = 152 bits (369), Expect = 2e-37
Identities = 82/137 (59%), Positives = 102/137 (74%)
Frame = +1
Query: 52 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 231
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV VRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNV-------------VRG 47
Query: 232 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 411
YKG++ GKV+QVYR+++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILD
Sbjct: 48 SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 106
Query: 412 RRAKGRLAALGKDKGKY 462
R+A GR A K KGK+
Sbjct: 107 RKASGR--AADKAKGKF 121
>06_03_1161 -
28089177-28089359,28089473-28089700,28089776-28089814,
28090681-28090737,28090924-28091046
Length = 209
Score = 28.7 bits (61), Expect = 3.2
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = +1
Query: 55 KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPI------RKDDEV 216
+F + ++S++ ++F I+ + L + R+K S+P+ R D V
Sbjct: 42 EFRLRTSTSQQPTLCQNFVVKFMIKTCPIQMRLKRWERKKCKPNSLPVLHKMHVRIGDTV 101
Query: 217 QVVRGHYKGQQVGKVMQVYRKKFVVYIE 300
QV+ G KG +VG+V ++++ V ++
Sbjct: 102 QVIAGREKG-KVGEVTRLFKHNSTVIVK 128
>12_02_0996 -
25115643-25115708,25115869-25116107,25116484-25116577,
25116726-25116864,25116960-25117081,25117261-25117491,
25117583-25117644,25118335-25118461,25118890-25119183,
25119266-25119622
Length = 576
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = +3
Query: 291 IH*EDSKRKGQWCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRG 470
+H S+ +G C H+ K C C + E + Q+ R + Q ++ I R
Sbjct: 463 LHENLSQVEGHDIALCCNHNYMKQCKCSIAQEPQLQARARQNAASQQSQLHEKGRQIDRS 522
Query: 471 NCHSH 485
HS+
Sbjct: 523 AVHSN 527
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 27.9 bits (59), Expect = 5.6
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Frame = +1
Query: 151 LSKELRQKFNVKS-MPIRKDDEVQVVRGHYKGQQVGKVMQ--VYRKKFVVYIERIQREKA 321
L+ E+ ++ N KS +P K+D V GH + + V +VMQ + + IE +Q E++
Sbjct: 3846 LNDEVEEEKNDKSNIPKEKEDRFTV--GHTE-ESVHEVMQSVLVSDADLRSIETLQCEES 3902
Query: 322 NGATAYVGIHPSKCVIVK 375
NG + S C+IV+
Sbjct: 3903 NGVKSTGDYLESGCIIVE 3920
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 160 ELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERI 306
E KF + P K D +Q+V + + QQ + V K+F +YI +
Sbjct: 1278 ETTWKFLATTNPYEKVDRLQIVSEYMEIQQTDGHVDVSAKEFKMYISSL 1326
>02_05_0082 + 25679089-25679253,25680998-25681030,25681758-25682579
Length = 339
Score = 27.5 bits (58), Expect = 7.4
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = -2
Query: 396 AVFIHLQLDNHTL*RVNADICCCTIGLFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNL 217
A + LQL TL R + + T+ F + LN + LF + +H ++ LAF +YN
Sbjct: 68 AAVVSLQLWTATLLRDASWVKILTVAYFFGSFLN--HNLF-LAIHELSHNLAFTTPSYNR 124
Query: 216 NFIVFAN 196
+FAN
Sbjct: 125 WLGIFAN 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,767,238
Number of Sequences: 37544
Number of extensions: 294169
Number of successful extensions: 743
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -