Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b02
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)             204   4e-53
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   1.9  
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)                      29   2.5  
SB_46751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)           29   3.3  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)            28   5.7  
SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)              27   7.6  
SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)        27   7.6  

>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score =  204 bits (498), Expect = 4e-53
 Identities = 96/132 (72%), Positives = 116/132 (87%)
 Frame = +1

Query: 52  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 231
           MK N +V+SSRRK+RK HFSAPS +RR LMS+PLSKELRQK+NV+S+P+RKDDEVQV RG
Sbjct: 1   MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQKYNVRSIPVRKDDEVQVTRG 60

Query: 232 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 411
           H+K QQVGKV+QVYRKK+V++I+RIQREKANGAT  VGIHPSK  IVKLK++KDRK ILD
Sbjct: 61  HFKSQQVGKVIQVYRKKWVIHIDRIQREKANGATVSVGIHPSKVEIVKLKIDKDRKKILD 120

Query: 412 RRAKGRLAALGK 447
           R+ + +LA  GK
Sbjct: 121 RKNRSKLAEKGK 132


>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 52  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMP--IRK 204
           MK + Q+    RK+ K H   P HIR+    S + K +R+  N  + P  IRK
Sbjct: 1   MKTHSQIQKHTRKS-KTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 324 WCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRGNCHSHG 488
           W N IC     ++C C+V DE     N + ++    G TW R    +R   +  G
Sbjct: 525 WHNRICMR--VEICGCKVCDEPLGMENSKIKANDIEGHTWTRNREPYRARLNYRG 577


>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
          Length = 661

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 498 LRGLHGCGSFLGVFTLVFAKCSQS 427
           L GLH CG  +     VFAKC Q+
Sbjct: 72  LVGLHPCGDLVPTMLKVFAKCDQA 95


>SB_46751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 36  GEERQNEVQQAGDFLKK--EKQEEAFQCSFTYKASVDVLSPV*GTKTKIQ 179
           G E++    +A ++ KK  E  +  F C   Y  +V  +    GTKTKIQ
Sbjct: 163 GNEKKKFTYEALEYAKKSVELDDRDFACHKWYAITVSNVGDFEGTKTKIQ 212


>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
          Length = 828

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 415 CDRGLLCGLYSSST*QSHTLKGE-CRHMLLHHWP--FLFESSQCIQQTFYD 272
           C  G +  +   ST  +  L+G+ CR M+L HWP  F  +  + + +T  D
Sbjct: 325 CKNGKVPVVSGGSTYDTWPLQGDFCRTMMLLHWPNWFSLDELESVDETSKD 375


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 27   CRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTY 125
            C F EER    QQ G   K E+ ++AF  +  Y
Sbjct: 2583 CPFTEERMESFQQIGRTAKSEESDKAFGFNTIY 2615


>SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 318 LFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVFAN 196
           L +++  ++YN+L  +H+ H  N L  V  T+  N +V A+
Sbjct: 338 LVAVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLVAAH 378


>SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)
          Length = 606

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +1

Query: 58  FNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDD 210
           F+    S  +K+ +R+F   +HI + + +S  SK+ ++    K    + DD
Sbjct: 124 FSTSQASRPKKSNRRYFPTSNHIAKAISASRYSKDDQESLKRKVEEWQTDD 174


>SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1429

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 24   PCRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSP 152
            PCRFGE   N++     F +    + A  CSF       + SP
Sbjct: 1239 PCRFGEAPDNKIASPCRFGEAPDNKIASPCSFGEAPDNKIASP 1281


>SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = +1

Query: 118 SHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQ--VVRGHYKGQQVGKVMQVYRK 279
           + ++++   + + K LR+    K+MP R+D+++Q  V    YK ++VG+  +  R+
Sbjct: 139 NEVKQLGNGNNMEKILREFIKKKNMPKREDEKLQGNVSGRDYKNKKVGQKSEEQRE 194


>SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)
          Length = 586

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 111 CSFTYKASVDVLSPV*GTKTKIQCKIHAYSQR 206
           CS   K  ++ L+ + GT  KI+ K HA+S++
Sbjct: 72  CSCKTKTELNALNELLGTDEKIEKKSHAWSEK 103


>SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 456 TLVFAKCSQSALCSAIEDCFAVFI 385
           T+  + C + + CS I DCF VFI
Sbjct: 221 TMPLSFCQKFSSCSVIIDCFEVFI 244


>SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)
          Length = 1017

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
 Frame = +1

Query: 10  ISVLSRVVLAKSDRMKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKS 189
           IS +S +    S ++   K VTS +  N K   S+     + + S  +SK      NVKS
Sbjct: 524 ISKISNIKSVTSGKITNIKSVTSGKISNIKSVTSSKISNIQSVTSGKISKMKSVTSNVKS 583

Query: 190 MPIRKDDEVQVVRGHYKGQQVGKVMQVYRK-KFVVYIERIQREKANGATAYVGIHPSKCV 366
           +   K   ++      K Q    + ++  K        R+Q   ++GA+A++ + P++  
Sbjct: 584 VTSGKISNIKSALPRVKYQSPSPLHRLDGKHPRSPRRIRVQTGVSSGASAHLNVKPTEYA 643

Query: 367 IVKLKM 384
             + K+
Sbjct: 644 YGRTKI 649


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,361,455
Number of Sequences: 59808
Number of extensions: 358339
Number of successful extensions: 1123
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)