Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b02
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...   164   4e-41
Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...   131   3e-31
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...   131   3e-31
AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormo...    28   3.8  
Z81075-7|CAI79229.1|  342|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81075-3|CAI79228.1|  192|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81075-2|CAB03048.1|  368|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL032645-3|CAI79264.1|  342|Caenorhabditis elegans Hypothetical ...    28   5.0  
AL031637-1|CAA21047.2|  317|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z50741-2|CAA90610.1|  383|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U23513-3|AAB36862.1|  209|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score =  164 bits (398), Expect = 4e-41
 Identities = 76/137 (55%), Positives = 106/137 (77%)
 Frame = +1

Query: 52  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 231
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 232 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 411
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK  I KLK++KDR+A+++
Sbjct: 61  RHKGN-TGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKVAITKLKLDKDRRALVE 119

Query: 412 RRAKGRLAALGKDKGKY 462
           R+A GR    G  KGK+
Sbjct: 120 RKAAGRSRVTGILKGKH 136


>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score =  131 bits (317), Expect = 3e-31
 Identities = 60/103 (58%), Positives = 82/103 (79%)
 Frame = +1

Query: 52  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 231
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 232 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSK 360
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score =  131 bits (317), Expect = 3e-31
 Identities = 60/103 (58%), Positives = 82/103 (79%)
 Frame = +1

Query: 52  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 231
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 232 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSK 360
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 119 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 532 FKNFIYLKNYLFKRPPWLWQFPRCI 458
           F NF++LKN+L  +     +F +CI
Sbjct: 79  FSNFLFLKNFLIPKTSRFCRFKKCI 103


>Z81075-7|CAI79229.1|  342|Caenorhabditis elegans Hypothetical
           protein F35C12.3c protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 322 WPFLFESSQCIQQTFYDTPASLC 254
           W  +F  ++CI  TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239


>Z81075-3|CAI79228.1|  192|Caenorhabditis elegans Hypothetical
           protein F35C12.3b protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 322 WPFLFESSQCIQQTFYDTPASLC 254
           W  +F  ++CI  TF + P SLC
Sbjct: 67  WRCMFAQNKCIGTTFQNIPISLC 89


>Z81075-2|CAB03048.1|  368|Caenorhabditis elegans Hypothetical
           protein F35C12.3a protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 322 WPFLFESSQCIQQTFYDTPASLC 254
           W  +F  ++CI  TF + P SLC
Sbjct: 243 WRCMFAQNKCIGTTFQNIPISLC 265


>AL032645-3|CAI79264.1|  342|Caenorhabditis elegans Hypothetical
           protein F35C12.3c protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 322 WPFLFESSQCIQQTFYDTPASLC 254
           W  +F  ++CI  TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239


>AL031637-1|CAA21047.2|  317|Caenorhabditis elegans Hypothetical
           protein Y47H9B.2 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 496 KRPPWLWQFPRCIYPCLCQVQPVC 425
           ++ PW ++    +YP LC++  +C
Sbjct: 249 RKYPWYYKMSSAMYPALCELAGIC 272


>Z50741-2|CAA90610.1|  383|Caenorhabditis elegans Hypothetical
           protein F55G7.2 protein.
          Length = 383

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +1

Query: 55  KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGH 234
           KFN+ V   RR N K+    P H  +   +  +++++ +     S+P  K      +  H
Sbjct: 94  KFNEAVALFRRDNPKKQLLLPKHWDQSTCTQQVAQKITEIAKDLSVPYPKK-----LNQH 148

Query: 235 YKG 243
           YKG
Sbjct: 149 YKG 151


>U23513-3|AAB36862.1|  209|Caenorhabditis elegans Hypothetical
           protein D2021.8 protein.
          Length = 209

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = -2

Query: 252 NLL--AFVVSTYNLNFIVFANRHGFYIEFLS*FLRQG 148
           NLL  A VV ++NL+ ++ A +HG ++E +   L+QG
Sbjct: 11  NLLKPAVVVDSFNLHAVISATQHG-HVESVEAALKQG 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,019,739
Number of Sequences: 27780
Number of extensions: 267006
Number of successful extensions: 753
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)