Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10a22
(397 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 34 0.009
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 27 1.1
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 25 3.2
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 25 3.2
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 3.2
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 5.6
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 25 5.6
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 25 5.6
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual 24 7.4
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 24 7.4
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch... 24 7.4
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 24 7.4
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 24 9.8
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp... 24 9.8
>SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 854
Score = 33.9 bits (74), Expect = 0.009
Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Frame = +3
Query: 6 LIQECLESVPTKDISLTVSSLDEDYGDRLLSTIARLLEDSRHVEQLLHWTTALVS----- 170
++Q+ ES+P D+ V L Y + ++ ++ H+E L W ++++
Sbjct: 743 VVQKVYESIPITDVEHVVQELPVSYLANFMGYLSSFAAETPHIEFHLRWMKSVLTYHGEY 802
Query: 171 TGRHKFP-PSALLAVEKVLTVKYSQLSKICDFNKYTI 278
R F S L +++K + V +LS++ N++ +
Sbjct: 803 LRRKNFEFASQLTSLQKSIVVLSKRLSQLSSNNEFQL 839
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 27.1 bits (57), Expect = 1.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 60 SSLDEDYGDRLLSTIARLLEDSRHVEQLL 146
+S+D DRLL T+ RL DSR++ +L
Sbjct: 592 NSIDAVPTDRLLRTLKRLASDSRNIVWIL 620
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 25.4 bits (53), Expect = 3.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 284 APYRIFVEITYFTQLRVFDGQNF 216
AP+ IF+E Y ++LR DG +
Sbjct: 49 APFPIFIEAGYGSKLRDVDGHEY 71
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 25.4 bits (53), Expect = 3.2
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = +3
Query: 30 VPTKDISLTVSS-----LDEDYGDRLLSTIARLLEDSRHVEQLLHW 152
V K I+LT SS ED+GD+ ST+ S +E W
Sbjct: 286 VEEKQINLTTSSDSHPTSTEDFGDKRASTVPTSENTSGFIEYFSQW 331
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 3.2
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 24 ESVPTKDISLTVSSLDEDYGDRLLST-IARLLEDSR 128
E PTKD+ + S++ED +R T IA L DS+
Sbjct: 487 EKKPTKDLQSPLPSVEEDSSNRDKKTDIADLHTDSK 522
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 24.6 bits (51), Expect = 5.6
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 108 RLLEDSRHVEQLLHWTTALVSTG-RHKFPPSALLAVEKVLTVKYSQL 245
R L +SR ++ H G +H ++LL +EK++ KYS +
Sbjct: 463 RKLTESRGLDLSAHHLAVFGGAGGQHACAIASLLNIEKIIIHKYSSV 509
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 24.6 bits (51), Expect = 5.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 367 SESEDVGPSVSMGSTSSRFKTTSPTVFMHLIVYLLKS 257
SE+ P + TSS ++ T +++LI Y+L++
Sbjct: 307 SENVTTKPEPPVPFTSSEYRNTEEEQYLNLIRYILEN 343
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 24.6 bits (51), Expect = 5.6
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = +3
Query: 9 IQECLESVPTKDISLTVSSLDEDYGDRLLSTIARLLEDSRHVEQLLHWTTALVSTGRHKF 188
+ E E P K + ++S+ D+ YG L + E S + +T L S +
Sbjct: 33 VDEVNELKPAKSKAFSISAQDQIYGTSSLKSRFSTHEASSEKDDSSDFTLVLPSNRMYIV 92
Query: 189 PPSALLAV 212
P +L++
Sbjct: 93 IPGLMLSI 100
>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 24.2 bits (50), Expect = 7.4
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -2
Query: 381 ITYFIQNQRTLVRQCPWAQLLL 316
+ YF++++ TL + PW LL+
Sbjct: 104 LQYFLKDESTLQQISPWMSLLI 125
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 24.2 bits (50), Expect = 7.4
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +3
Query: 237 SQLSKICDFNKYTIRC--IKTVGDVVL 311
+QL K+ D YT+RC I+ + +VV+
Sbjct: 310 TQLVKLLDSESYTLRCAIIEVLANVVI 336
>SPBC2G5.04c |||COPII-coated vesicle component Erv41
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 333
Score = 24.2 bits (50), Expect = 7.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 356 GRWSVSVHGLNFFSF*DHISDGLYAP 279
GR ++ H LNF + + +S G Y P
Sbjct: 177 GRSNIPFHSLNFTHYIEELSFGEYYP 202
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 24.2 bits (50), Expect = 7.4
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -1
Query: 388 YDNNIFYSES----EDVGPSVSMGSTSSRFKTTSPTVFMHLIVYLLKSHILLNCEYLTVR 221
YDN+IFYSE ED S+ + S F + L+ ++ SH+ C YL R
Sbjct: 18 YDNSIFYSERLHAIEDSNESLYL-LAYSHFLNLDYNIVYDLLDRVI-SHV--PCTYLFAR 73
Query: 220 T 218
T
Sbjct: 74 T 74
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 23.8 bits (49), Expect = 9.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 60 SSLDEDYGDRLLSTIARLLEDSRHVEQLLHWTTALVSTGRHKF 188
+++++D + L+ + +EDS +EQL T A T KF
Sbjct: 868 ATIEKDISSKKLTHVVMFVEDSTRLEQL---TKACELTQHRKF 907
>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 23.8 bits (49), Expect = 9.8
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +3
Query: 15 ECLESVPTKDISLT-VSSLDEDYG 83
+CL SVP DIS+T L + YG
Sbjct: 30 DCLSSVPWNDISVTGFEYLAKKYG 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,431,746
Number of Sequences: 5004
Number of extensions: 24926
Number of successful extensions: 77
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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