Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a22
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80447-3|AAB37807.2|  910|Caenorhabditis elegans Hypothetical pr...    43   7e-05
AF016424-7|AAB65329.3|  520|Caenorhabditis elegans Hypothetical ...    29   1.6  
U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine rece...    28   2.8  
Z82051-2|CAB04816.1|  237|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z81116-11|CAB03308.1|  112|Caenorhabditis elegans Hypothetical p...    27   6.4  
Z81532-3|CAC70088.2|  659|Caenorhabditis elegans Hypothetical pr...    26   8.5  
U46668-5|AAA93349.2|  569|Caenorhabditis elegans Hypothetical pr...    26   8.5  
AL021487-12|CAA16358.2|  324|Caenorhabditis elegans Hypothetical...    26   8.5  

>U80447-3|AAB37807.2|  910|Caenorhabditis elegans Hypothetical protein
            F55F8.3 protein.
          Length = 910

 Score = 43.2 bits (97), Expect = 7e-05
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
 Frame = +3

Query: 9    IQECLESVPTKDISLTVSSLDEDYGDRLLSTI--ARLLEDSRHVEQLLHWTTALVSTG-- 176
            I ECLES     I L  SSL   Y +RLL  +    ++  +RHV   + W  A++     
Sbjct: 763  ITECLESTSISQIPLVASSLPLMYAERLLKWMVEGNVMSSTRHVHFYMIWLRAILQHHGM 822

Query: 177  --RHKFPPSALLAVEKVLTVKYSQLSKICDFNKYTIRCIKTVGDVVLKREEVEPMDTDGP 350
              + +   + L  +++++      ++K+ + NK+ +  +  +       ++ E  + D  
Sbjct: 823  QLKGRADVATLTGIQQIVAHHQQHITKLANQNKFALNWLVKIRQSKKSVKKEEEEEEDVS 882

Query: 351  TSSDSE 368
              SD E
Sbjct: 883  DESDDE 888


>AF016424-7|AAB65329.3|  520|Caenorhabditis elegans Hypothetical
           protein F39G3.3 protein.
          Length = 520

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 212 YGEQRARRELVSPRRHERRGPVQQLLHVPAVLEEAR 105
           +G   ARR+ +SP R  RR P  QL +     ++ R
Sbjct: 62  HGRSPARRQEISPIRKTRRSPANQLSNYEIAQQKVR 97


>U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 28 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 376 IFYSESEDVGPSVSMGSTSSRFKTTSPTVFMHLIVYLL 263
           + +S+   VGP+ S+ S   RF+ + P  + HLI+  L
Sbjct: 243 VIFSQILCVGPTSSITSVFIRFRDSIPLEWFHLIISYL 280


>Z82051-2|CAB04816.1|  237|Caenorhabditis elegans Hypothetical
           protein T23D5.3 protein.
          Length = 237

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 12  QECLESVPTKDISLTVSSLDEDYGDRLLSTIA 107
           + C+  +P +D+ +  +  D D GD + +TIA
Sbjct: 44  ESCIRMIPPEDVGIPGTLPDNDPGDPIKTTIA 75


>Z81116-11|CAB03308.1|  112|Caenorhabditis elegans Hypothetical
           protein T06C12.12 protein.
          Length = 112

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 343 SVSMGSTSSRFKTTSPTVFMHLIVYLLKSHILLNC 239
           S SM ++   F T S TV   L++YL   HI+L C
Sbjct: 66  SRSMSTSFDAFATPS-TVGFFLVIYLFLIHIVLIC 99


>Z81532-3|CAC70088.2|  659|Caenorhabditis elegans Hypothetical
           protein F36F2.6 protein.
          Length = 659

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 170 RHERRGPVQQLLHVPAVLEEARYRAQQPVAVVF 72
           +H+ RG  + LL V  V++E R++      +VF
Sbjct: 331 KHDLRGSEEVLLDVKEVIKEERHKVLDGCVIVF 363


>U46668-5|AAA93349.2|  569|Caenorhabditis elegans Hypothetical
           protein F38E9.1 protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -3

Query: 281 PYRIFVEITYFTQLRVFD-GQNFLYGEQRARRELVSPRRHERR 156
           P RI + +T   +LR+   G+   YG QR++R  +SPR  E++
Sbjct: 476 PVRIALPVTE-EELRLAALGEYPRYGSQRSQRSQLSPRIEEKK 517


>AL021487-12|CAA16358.2|  324|Caenorhabditis elegans Hypothetical
           protein Y45F10B.6 protein.
          Length = 324

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 316 RFKTTSPTVFMHLIVYLLKSHILLNCEYLTVR 221
           R ++ +P VF+ ++V  L S + +  +YLT+R
Sbjct: 59  RMESLNPHVFLVIVVSQLTSILYMISDYLTIR 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,056,727
Number of Sequences: 27780
Number of extensions: 142758
Number of successful extensions: 508
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)