Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a22
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   3.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   5.1  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 270 YTIRCIKTVGDVVLKREEVEPMDTDGPTSSDSE*NMLLS 386
           +TI CI T+   ++     E +  DG +  +   N+LLS
Sbjct: 33  FTILCILTLALTLVTLVRAEDIFEDGKSDKEILDNLLLS 71



 Score = 21.0 bits (42), Expect = 5.1
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = -1

Query: 271 YLLKSHILLNCE 236
           YL++ H++L+C+
Sbjct: 176 YLMRRHLILSCQ 187


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 270 YTIRCIKTVGDVVLKREEVEPMDTDGPTSSDSE*NMLLS 386
           +TI CI T+   ++     E +  DG +  +   N+LLS
Sbjct: 33  FTILCILTLALTLVTLVRAEDIFEDGKSDKEILDNLLLS 71



 Score = 21.0 bits (42), Expect = 5.1
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = -1

Query: 271 YLLKSHILLNCE 236
           YL++ H++L+C+
Sbjct: 176 YLMRRHLILSCQ 187


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 270 YTIRCIKTVGDVVLKREEVEPMDTDGPTSSDSE*NMLLS 386
           +TI CI T+   ++     E +  DG +  +   N+LLS
Sbjct: 33  FTILCILTLALTLVTLVRAEDIFEDGKSDKEILDNLLLS 71



 Score = 21.0 bits (42), Expect = 5.1
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = -1

Query: 271 YLLKSHILLNCE 236
           YL++ H++L+C+
Sbjct: 227 YLMRRHLILSCQ 238


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 270 YTIRCIKTVGDVVLKREEVEPMDTDGPTSSDSE*NMLLS 386
           +TI CI T+   ++     E +  DG +  +   N+LLS
Sbjct: 33  FTILCILTLALTLVTLVRAEDIFEDGKSDKEILDNLLLS 71



 Score = 21.0 bits (42), Expect = 5.1
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = -1

Query: 271 YLLKSHILLNCE 236
           YL++ H++L+C+
Sbjct: 176 YLMRRHLILSCQ 187


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 105 LSCSAAGRRSLRLDSI 58
           + C   GRR LRLD+I
Sbjct: 215 IGCLTLGRRILRLDAI 230


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 391 FYDNNIFYSESEDVGPSVSMGSTSSR 314
           F +NN+ Y  SED+  + S+    S+
Sbjct: 286 FGENNVQYQGSEDILNTQSLAKAVSK 311


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 391 FYDNNIFYSESEDVGPSVSMGSTSSR 314
           + +NN+ Y  S+D+  + S G   S+
Sbjct: 291 YEENNVQYEGSQDILNTQSFGKVVSK 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,579
Number of Sequences: 438
Number of extensions: 1712
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)