Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a21
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    27   3.4  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   4.5  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   4.5  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    26   5.9  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   7.9  

>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 657 KWNIDSTMV*RPKTLMPSSNVDK*RPIVNTAPRNAA 550
           K N++S +  +  +L  SSN    R  +NTAP N A
Sbjct: 123 KRNVESILTPKNPSLFSSSNAASQRGSLNTAPSNFA 158


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 223  LFSYTYSQFITNIHYGHRYDDNLLFMT 143
            LFS T +Q    +HYGH    N +FMT
Sbjct: 1239 LFSRTLAQIGGKLHYGHPDFLNGIFMT 1265


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -3

Query: 240 NIGYIFYFHILIHNSSQIFITVTDTM---TIYCS*LEWVN*NKNQINNTKLLKS 88
           N+ Y+F  HI+ HN  +    +T +    TI    L+W   N  + +  KL  S
Sbjct: 588 NVIYLFSLHIIFHNELESLCGITQSSFIPTIMRQLLDWFK-NFQRYSTQKLASS 640


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 235 RLHFLFSYTYSQFITNIHYGHRYDD 161
           R+H + +   +++ITNI+ G R DD
Sbjct: 595 RIHPILNQATAEYITNIYCGLRNDD 619


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 260  IHKSVLNNNLENYSRLQASFIMDVLTMKNICPAGKQAIIWFM 385
            IH   L + +  YS+L+   +M  +T   +C  GK   + F+
Sbjct: 1097 IHNGALVHWVYPYSKLRGPNVMGTITALKLCSLGKGKSLSFV 1138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,714
Number of Sequences: 5004
Number of extensions: 59333
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)