Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a21
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0095 - 26395104-26395871,26396040-26396486                       31   0.87 
04_01_0266 - 3563075-3563109,3563405-3564754,3564862-3564965,356...    29   4.6  
01_06_1710 - 39342842-39343069,39344004-39344165,39344275-393445...    28   8.1  

>01_06_0095 - 26395104-26395871,26396040-26396486
          Length = 404

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 343 KHMPRRKTSDNMVYANRLYIFHIILFWKPFRI 438
           K M    T+ N VY  R Y F + +FW PF +
Sbjct: 154 KDMSANPTTQNKVYHYRGYNFTVSMFWSPFLV 185


>04_01_0266 -
           3563075-3563109,3563405-3564754,3564862-3564965,
           3564967-3565421
          Length = 647

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 282 LFKTDLCISAIYVINIGYIFYFHILIHNSSQIFITVTDTMTI 157
           L+   L I  + V+  GY+ Y HI+I +   + +  T  M I
Sbjct: 104 LWLRHLQILVVQVLRAGYVLYKHIIIRSEKTVLLLATILMFI 145


>01_06_1710 -
           39342842-39343069,39344004-39344165,39344275-39344518,
           39344661-39344674
          Length = 215

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = +2

Query: 479 LYFCLLNFILRYAYKGFLYEVSIRAAFLGAVFTIGLYLSTFEDGIKVFGLYTMVLSMFHF 658
           L F LL  +    +K  L+ VS+    L  V+   L L       +  GL+ MV+SMF F
Sbjct: 36  LVFHLLFVVNTEEHKSTLF-VSVAGFVLDTVYLFLLGLRKSSQKFRCVGLFLMVISMFLF 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,210,373
Number of Sequences: 37544
Number of extensions: 296330
Number of successful extensions: 443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)