Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a21
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88175-3|AAB42280.1|  295|Caenorhabditis elegans Hypothetical pr...    42   6e-04
U80450-7|AAB37832.1|  293|Caenorhabditis elegans Hypothetical pr...    38   0.007
Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical pr...    31   0.78 
Z81057-6|CAB02913.1|  221|Caenorhabditis elegans Hypothetical pr...    29   4.2  
X85790-1|CAA59790.1|  218|Caenorhabditis elegans mangenese super...    29   4.2  
X77021-1|CAA54319.1|  218|Caenorhabditis elegans manganese super...    29   4.2  
U42844-5|AAB53822.1|  218|Caenorhabditis elegans Sod (superoxide...    29   4.2  
D85499-1|BAA12821.1|  221|Caenorhabditis elegans manganese super...    29   4.2  
D12984-1|BAA02363.1|  221|Caenorhabditis elegans manganese super...    29   4.2  
Z77652-10|CAI70404.1|  307|Caenorhabditis elegans Hypothetical p...    28   7.3  
AF068709-15|AAC19246.2|  317|Caenorhabditis elegans Serpentine r...    28   7.3  
U28733-2|AAA68303.3|  381|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U88175-3|AAB42280.1|  295|Caenorhabditis elegans Hypothetical
           protein F21F3.3 protein.
          Length = 295

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +2

Query: 536 EVSIRAAFLGAVFTIGLYLSTFEDGI--KVFGLYTMVLSMFHFSEFMSVALTN 688
           ++ + AAFLG    + L  +   +G   + F  Y + LS+FHFSEF+  ALTN
Sbjct: 76  QILMPAAFLGCAVAVNLVYTVAHEGELWEYFSRYFLFLSVFHFSEFVFTALTN 128


>U80450-7|AAB37832.1|  293|Caenorhabditis elegans Hypothetical
           protein M01E11.1 protein.
          Length = 293

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 551 AAFLGAVFTIGLYLSTFEDG--IKVFGLYTMVLSMFHFSEFMSVALTN 688
           AA LG    + L  S   +G  ++    Y + LSMFHF+EF+  ALTN
Sbjct: 79  AALLGCAVAVSLAYSVSHEGEVLEHLSHYFLFLSMFHFTEFVFTALTN 126


>Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical
           protein H12I19.1 protein.
          Length = 327

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +1

Query: 28  FIYKYLKEPTK-SIKYILLIVRLQ*FCIVNLIFILIHPLKS*TINCHRICDRNEYL**IV 204
           F+ K++ E    S+ Y+L+      F I+ L +IL+ P        ++  D+N ++  I 
Sbjct: 12  FLAKFIDEGILLSVLYVLI------FIILFLFYILVFPFYVYVNKVNKERDKNAFVFPIT 65

Query: 205 NKYMKIKNVAYIDYIY 252
           N + ++   A+I YIY
Sbjct: 66  NHFFEMTKNAFIGYIY 81


>Z81057-6|CAB02913.1|  221|Caenorhabditis elegans Hypothetical
           protein F10D11.1 protein.
          Length = 221

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 673 THELRKMEHRQHHGVETENLNAI 605
           +HE+ ++ H++HH     NLN I
Sbjct: 43  SHEIMQLHHQKHHATYVNNLNQI 65


>X85790-1|CAA59790.1|  218|Caenorhabditis elegans mangenese
           superoxide dismutase protein.
          Length = 218

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 673 THELRKMEHRQHHGVETENLNAI 605
           +HE+ ++ H++HH     NLN I
Sbjct: 43  SHEIMQLHHQKHHATYVNNLNQI 65


>X77021-1|CAA54319.1|  218|Caenorhabditis elegans manganese
           superoxide dismutase protein.
          Length = 218

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 673 THELRKMEHRQHHGVETENLNAI 605
           +HE+ ++ H++HH     NLN I
Sbjct: 43  SHEIMQLHHQKHHATYVNNLNQI 65


>U42844-5|AAB53822.1|  218|Caenorhabditis elegans Sod (superoxide
           dismutase) protein3 protein.
          Length = 218

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 673 THELRKMEHRQHHGVETENLNAI 605
           +HE+ ++ H++HH     NLN I
Sbjct: 43  SHEIMQLHHQKHHATYVNNLNQI 65


>D85499-1|BAA12821.1|  221|Caenorhabditis elegans manganese
           superoxide dismutase protein.
          Length = 221

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 673 THELRKMEHRQHHGVETENLNAI 605
           +HE+ ++ H++HH     NLN I
Sbjct: 43  SHEIMQLHHQKHHATYVNNLNQI 65


>D12984-1|BAA02363.1|  221|Caenorhabditis elegans manganese
           superoxide dismutaseprecursor protein.
          Length = 221

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 673 THELRKMEHRQHHGVETENLNAI 605
           +HE+ ++ H++HH     NLN I
Sbjct: 43  SHEIMQLHHQKHHATYVNNLNQI 65


>Z77652-10|CAI70404.1|  307|Caenorhabditis elegans Hypothetical
           protein C06B3.12 protein.
          Length = 307

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = +2

Query: 476 SLYFCLLNFILRYAYKGFLYEVSIRAAFLGAVFTIGLYLSTFEDGIKVFGLYTMVLSMFH 655
           ++  C    I R    G + E+  + A+       G+YL+ F D +  F +   +L++ H
Sbjct: 47  TMILCNFGLIFRGFLDGVIPEIISKDAYYWFHNPTGIYLNVFNDFVYYFPMTLTILTLAH 106


>AF068709-15|AAC19246.2|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 62 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +2

Query: 479 LYFCLLNFILRYAYKGFLYEVSIRAAFLGAVFTIGLYLSTFEDGIKVFGLYTMVLSMFHF 658
           L  C  + + +Y + GFLYEV I     G +  I  + +T +  I V   ++ +  + + 
Sbjct: 147 LVVCFFSHLPKYLWDGFLYEVYI---VNGQLICIN-FPTTLDQAINVVAAFSAIYFLLNL 202

Query: 659 SEFMSVAL 682
           +  +S A+
Sbjct: 203 AIGLSTAI 210


>U28733-2|AAA68303.3|  381|Caenorhabditis elegans Hypothetical
           protein C54A12.2 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 267 LCISAIYVINIGYIFYFHILIHNSSQIFI 181
           L I  IY+  +G IF + I+IH +S  FI
Sbjct: 336 LTIQNIYLEMLGEIFNYLIIIHTASTFFI 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,509,017
Number of Sequences: 27780
Number of extensions: 321252
Number of successful extensions: 713
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)