Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a21
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    26   0.30 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.4  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = +1

Query: 250 YRGNTQISFKQ*S*KLLSTTGILYNGCFNN------EKHMPRRKTSDNMVYANRLYIFHI 411
           Y G   I   Q S K++S  G+L+ G  NN       +H P ++ + +MV  N   +  I
Sbjct: 296 YEGIQDIFNTQSSAKVMSKNGVLFFGLVNNSAIGCWNEHQPLQRQNMDMVAQNEKTLQMI 355

Query: 412 I 414
           I
Sbjct: 356 I 356



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 120 NQINNTKLLKSNNQ 79
           N I NT+  KSNNQ
Sbjct: 410 NLIKNTRCAKSNNQ 423


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
 Frame = +1

Query: 292 KLLSTTGILYNGCFNN------EKHMPRRKTSDNMVYAN 390
           K++S  G+L+ G  NN       +H P ++ + +MV  N
Sbjct: 310 KIMSKNGVLFFGLMNNSAIGCWNEHQPLQRENMDMVAQN 348


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 181 NEYL**IVNKYMKIKN 228
           NEY+  + NKY KI N
Sbjct: 370 NEYIWIVSNKYQKIAN 385


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +3

Query: 627 STPWCCRC 650
           S PW CRC
Sbjct: 923 SNPWSCRC 930


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,904
Number of Sequences: 438
Number of extensions: 4238
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)