Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a19
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    41   1e-05
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    41   1e-05
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.65 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.0  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 9/150 (6%)
 Frame = +3

Query: 234 PKYFAXXXXXXXXXXXXTHTAVVPLDLVKCRLQV--------DAEKYKNVVNGFKVSVRE 389
           P  FA            + T V P++ VK  LQV        + ++YK +++ F    +E
Sbjct: 7   PVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKE 66

Query: 390 EGVRGLAKGWAPTFIGYSMQGLCKFGFYEVFKVAYAGMLDDETAYTYRTFVYLAASASAE 569
           +G     +G     I Y       F F + +K  + G +D  T +  R FV   AS  A 
Sbjct: 67  QGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQF-LRYFVGNLASGGAA 125

Query: 570 FIADIA-LSPMEAAKVRIQTMPGFASTLRE 656
               +  + P++ A+ R+    G A   RE
Sbjct: 126 GATSLCFVYPLDFARTRLAADVGKAGGERE 155


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 9/150 (6%)
 Frame = +3

Query: 234 PKYFAXXXXXXXXXXXXTHTAVVPLDLVKCRLQV--------DAEKYKNVVNGFKVSVRE 389
           P  FA            + T V P++ VK  LQV        + ++YK +++ F    +E
Sbjct: 7   PVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKE 66

Query: 390 EGVRGLAKGWAPTFIGYSMQGLCKFGFYEVFKVAYAGMLDDETAYTYRTFVYLAASASAE 569
           +G     +G     I Y       F F + +K  + G +D  T +  R FV   AS  A 
Sbjct: 67  QGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQF-LRYFVGNLASGGAA 125

Query: 570 FIADIA-LSPMEAAKVRIQTMPGFASTLRE 656
               +  + P++ A+ R+    G A   RE
Sbjct: 126 GATSLCFVYPLDFARTRLAADVGKAGGERE 155


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 322 HFTRSRGTTAVWVRPHDRTP 263
           HF  S G TA+W+ P +R+P
Sbjct: 58  HFIES-GITAIWLSPINRSP 76


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 567 PPTQTPPGTRRYGK 526
           PP QTPP  +  G+
Sbjct: 395 PPRQTPPSRKESGR 408


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 124 GPRNGEFRAASSNEEN 77
           GPRNG+ +  SS  EN
Sbjct: 210 GPRNGKRKRKSSTIEN 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,270
Number of Sequences: 438
Number of extensions: 4417
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)