Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10a17
(633 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ... 241 4e-64
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ... 233 5e-62
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A) 232 1e-61
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote... 34 0.090
At4g31260.1 68417.m04437 hypothetical protein 30 1.5
At2g31890.1 68415.m03896 expressed protein 28 4.5
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p... 28 4.5
At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding ... 27 7.8
At3g14840.2 68416.m01875 leucine-rich repeat family protein / pr... 27 7.8
>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
PIR:T45883
Length = 166
Score = 241 bits (589), Expect = 4e-64
Identities = 116/163 (71%), Positives = 140/163 (85%), Gaps = 1/163 (0%)
Frame = +1
Query: 121 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 297
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 298 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 477
V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DVI IAKIMR R
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120
Query: 478 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 606
S+A+ LSG+VKEILGT SVGCTV+G+ P DL ++INSG + I
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDI 163
>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
RIBOSOMAL PROTEIN L12, Prunus armeniaca,
SWISSPROT:RL12_PRUAR
Length = 166
Score = 233 bits (571), Expect = 5e-62
Identities = 112/165 (67%), Positives = 137/165 (83%), Gaps = 1/165 (0%)
Frame = +1
Query: 121 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 297
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 298 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 477
V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV IA+IMR R
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120
Query: 478 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 612
S+A+ LSG+V+EILGT SVGCTV+G+ P DL +I G + I E
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPE 165
>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
Length = 166
Score = 232 bits (568), Expect = 1e-61
Identities = 111/165 (67%), Positives = 137/165 (83%), Gaps = 1/165 (0%)
Frame = +1
Query: 121 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 297
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 298 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 477
V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV IA+IMR R
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120
Query: 478 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 612
S+A+ LSG+V+EILGT SVGCTV+G+ P D+ +I G + I E
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPE 165
>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 receptor type
precursor, Oryza sativa, PIR:A57676
Length = 1025
Score = 33.9 bits (74), Expect = 0.090
Identities = 19/73 (26%), Positives = 38/73 (52%)
Frame = -2
Query: 587 LMSSIRSCGGLPSTVHPTDCAVPRISFTEPERYRAIDLFLMIFAMPITSSREMLPLCLIF 408
+ +I CGG+PS + C+V P R+ ++ + I + ++ +L LC+++
Sbjct: 622 VFGNINLCGGIPS-LQLQPCSVEL-----PRRHSSVRKIITICVSAVMAALLLLCLCVVY 675
Query: 407 FCFLRSRGGSLRA 369
C+ + R S+RA
Sbjct: 676 LCWYKLRVKSVRA 688
>At4g31260.1 68417.m04437 hypothetical protein
Length = 63
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -2
Query: 626 IRNIYSSMVKAPLLMSSIRSCGGLPSTV 543
IR++Y VK+ + + IRSCGG+ ++V
Sbjct: 28 IRSLYPDKVKSEIPIQDIRSCGGVLASV 55
>At2g31890.1 68415.m03896 expressed protein
Length = 671
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 379 EPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMA 486
+PP+ RKKQKN K +LED G+ +R R +A
Sbjct: 112 QPPKKRKKQKNSK-----ALEDTEGMDWCVRARKIA 142
>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
putative / ADP, ATP translocase, putative / adenine
nucleotide translocase, putative strong similarity to
SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
chloroplast precursor (ADP/ATP translocase 1) (Adenine
nucleotide translocase 1) {Arabidopsis thaliana};
contains Pfam profile PF03219: TLC ATP/ADP transporter
Length = 618
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -2
Query: 464 IFAMPITSSREMLPLCLIFFCFL 396
IF + +T+ ++++PL L+FFC L
Sbjct: 102 IFGVEVTTLKKIVPLGLMFFCIL 124
>At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding
subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1
protein GI:497629, SP:P42762 from [Arabidopsis
thaliana]; contains Pfam profile PF02861: Clp amino
terminal domain
Length = 945
Score = 27.5 bits (58), Expect = 7.8
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 178 GEVGATSSLAPKIGPLGLSPKKVG-DDIAKATSDWKGLKITVQLTVQNR 321
GE+ SSL P G P VG DDIA S W G+ + Q+T R
Sbjct: 570 GELVEESSLPPAAGDD--EPILVGPDDIAAVASVWSGIPVQ-QITADER 615
>At3g14840.2 68416.m01875 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain; contains 2 predicted transmembrane domains
Length = 988
Score = 27.5 bits (58), Expect = 7.8
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +1
Query: 94 IKLN*VINKMPPKFD--PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKA 267
++ N + K+PP+ PN ++ N + GE+ +T + + L +S + I
Sbjct: 165 LEYNQLSGKIPPELGNLPNLKRLSNN--LSGEIPSTFAKLTTLTDLRISDNQFTGAIPDF 222
Query: 268 TSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 363
+WKGL+ +L +Q + +PSA L+
Sbjct: 223 IQNWKGLE---KLVIQ-ASGLVGPIPSAIGLL 250
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,423,712
Number of Sequences: 28952
Number of extensions: 302901
Number of successful extensions: 802
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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