Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a15
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43990.2 68418.m05382 SET domain-containing protein identical...    31   0.95 
At5g43990.1 68418.m05383 SET domain-containing protein identical...    31   0.95 
At5g40030.1 68418.m04854 protein kinase, putative similar to stp...    29   2.2  
At1g74220.1 68414.m08596 expressed protein similar to GB:AAD2007...    29   2.9  
At5g06670.1 68418.m00753 kinesin motor protein-related                 27   8.8  
At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00...    27   8.8  

>At5g43990.2 68418.m05382 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 740

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 155 FTRVVNPTT-FACEIGSKYCRIVSIISNGKRMR 60
           F + V PT+ F C+ GS +CR+   IS GK ++
Sbjct: 705 FNQDVFPTSPFHCQCGSDFCRVRKQISKGKNVK 737


>At5g43990.1 68418.m05383 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 717

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 155 FTRVVNPTT-FACEIGSKYCRIVSIISNGKRMR 60
           F + V PT+ F C+ GS +CR+   IS GK ++
Sbjct: 682 FNQDVFPTSPFHCQCGSDFCRVRKQISKGKNVK 714


>At5g40030.1 68418.m04854 protein kinase, putative similar to stpk1
           protein kinase [Solanum tuberosum]
           gi|1200256|emb|CAA62476
          Length = 499

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +1

Query: 250 LGITDHPMTPYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRP 375
           LG+ DHP  P L       K SC     C   D+ I+   +P
Sbjct: 166 LGLLDHPFLPTLYSHFETEKFSCLLMEFCSGGDLHILRQKQP 207


>At1g74220.1 68414.m08596 expressed protein similar to GB:AAD20071
           from [Arabidopsis thaliana]
          Length = 316

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 469 VTPSTVQINLYDDNEDYLNCFDCCIVDC 552
           V P T      D N  +L+CF CC   C
Sbjct: 288 VAPKTEADRASDRNPKWLSCFPCCTTSC 315


>At5g06670.1 68418.m00753 kinesin motor protein-related 
          Length = 992

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
 Frame = +1

Query: 343 EDVRIVTLNRPLTSLENFLSKQFLWYKLARKLIEHERQM------DRCVTPSTVQINLYD 504
           E+V +    RPL+  E    ++  WY     ++ +E         DR   P+T   N+YD
Sbjct: 65  ENVTVTVRFRPLSPREIRKGEEIAWYADGETIVRNENNQSIAYAYDRVFGPTTTTRNVYD 124


>At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 435

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +1

Query: 67  RLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNN--VEDYLKLTPANYHFTT--DQ 234
           RLPL ++D IL  LDP S  K+      +   +  D N   E + ++  +  H +    +
Sbjct: 3   RLPLHLLDEILFNLDPKSLGKMRCTNKSINTHISDDPNFKFEYFSRIGSSLLHISKVGSK 62

Query: 235 FICNY 249
           F+C Y
Sbjct: 63  FLCFY 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,639,813
Number of Sequences: 28952
Number of extensions: 264843
Number of successful extensions: 650
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)