Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a14
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              26   0.36 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.4  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   5.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   5.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.7  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +1

Query: 385 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 483
           P C  C    H  + CP+G +   T    N  K
Sbjct: 76  PICGACGDIAHTVKYCPKGTKNPGTLATVNAFK 108



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +1

Query: 466 CYNCNKSGHISRNCPDGTK 522
           C  C    H  + CP GTK
Sbjct: 78  CGACGDIAHTVKYCPKGTK 96


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 133 EFSKPIAMSSSVCYKCNRTGHFAR 204
           +  KP+    +V Y   ++G+F+R
Sbjct: 165 DIGKPVVAEETVDYMLEKSGNFSR 188


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 498 PQLSRRHQDVLRVRQARPHLARVRR 572
           P+L+ R   V     ARPH + V R
Sbjct: 110 PELTNRKSVVFHHDNARPHTSLVTR 134


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 514 RRDSCGRCGRTCCSYSRSASQTPAP 440
           R +S G CGR   ++  S    P P
Sbjct: 40  RSESSGYCGRRPSTFGSSNEALPQP 64


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 514 RRDSCGRCGRTCCSYSRSASQTPAP 440
           R +S G CGR   ++  S    P P
Sbjct: 40  RSESSGYCGRRPSTFGSSNEALPQP 64


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 43  SKEASHHHYKIVKD 2
           SKE S+  Y+I+KD
Sbjct: 203 SKECSNQEYEIMKD 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,097
Number of Sequences: 438
Number of extensions: 3352
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)