Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10a14
(646 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 111 3e-25
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 109 2e-24
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 98 4e-21
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 81 6e-16
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 81 8e-16
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 64 6e-11
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 62 4e-10
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 54 8e-08
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 51 8e-07
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 51 8e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 51 8e-07
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 51 8e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 51 8e-07
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 50 2e-06
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 48 4e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 48 4e-06
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 40 0.001
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 39 0.003
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 39 0.003
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 38 0.004
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.004
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.004
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.006
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 37 0.010
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.030
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 35 0.040
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 35 0.040
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 35 0.053
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 33 0.12
At4g19130.1 68417.m02823 replication protein-related similar to ... 33 0.16
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 33 0.16
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 33 0.16
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.21
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 32 0.28
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 32 0.37
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.50
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 31 0.50
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.50
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 31 0.65
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 31 0.65
At3g31950.1 68416.m04046 hypothetical protein 31 0.65
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 31 0.65
At5g08730.1 68418.m01037 IBR domain-containing protein contains ... 31 0.87
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 31 0.87
At5g51300.2 68418.m06360 splicing factor-related contains simila... 30 1.1
At5g51300.1 68418.m06359 splicing factor-related contains simila... 30 1.1
At5g47430.1 68418.m05844 expressed protein 30 1.1
At5g47390.1 68418.m05840 myb family transcription factor contain... 30 1.1
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 1.1
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 30 1.1
At4g17410.1 68417.m02607 expressed protein 30 1.1
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 1.1
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa... 30 1.1
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 30 1.1
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.1
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.1
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 1.5
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 29 2.0
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 2.0
At2g16690.1 68415.m01915 hypothetical protein similar to zinc fi... 29 2.0
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 29 2.0
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 29 2.0
At5g61670.2 68418.m07738 expressed protein 29 2.6
At5g61670.1 68418.m07737 expressed protein 29 2.6
At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi... 29 2.6
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 2.6
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 29 3.5
At5g21140.1 68418.m02524 expressed protein 29 3.5
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 29 3.5
At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar ... 29 3.5
At4g06479.1 68417.m00885 hypothetical protein 29 3.5
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 29 3.5
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai... 29 3.5
At2g31850.1 68415.m03889 expressed protein 29 3.5
At2g07740.1 68415.m01002 zinc knuckle (CCHC-type) family protein... 29 3.5
At4g30200.3 68417.m04295 expressed protein contains weak similar... 28 4.6
At4g30200.2 68417.m04294 expressed protein contains weak similar... 28 4.6
At4g30200.1 68417.m04293 expressed protein contains weak similar... 28 4.6
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein... 28 4.6
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein... 28 4.6
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein... 28 6.1
At5g27220.1 68418.m03247 protein transport protein-related low s... 28 6.1
At4g06526.1 68417.m00938 hypothetical protein 28 6.1
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ... 28 6.1
At1g40080.1 68414.m04737 hypothetical protein member of hypothet... 28 6.1
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein... 27 8.1
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 8.1
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 27 8.1
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 111 bits (268), Expect = 3e-25
Identities = 57/164 (34%), Positives = 75/164 (45%), Gaps = 31/164 (18%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA---------- 318
CY C TGHFAR+CT G + + C+ C GH ARDC +++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 319 ----DRCYRCNGTGHIARECAQ----------SPDEPSCYNCNKTGHIARNCPEGGRESA 456
D CY C GH AR+C Q +CY+C GHIAR+C +
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC--ATKRQP 251
Query: 457 TQTCYNCNKSGHISRNCPD-------GTKTCYVCGKPGHISREC 567
++ CY C SGH++R+C CY CGK GH +REC
Sbjct: 252 SRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 109 bits (261), Expect = 2e-24
Identities = 60/171 (35%), Positives = 79/171 (46%), Gaps = 34/171 (19%)
Frame = +1
Query: 163 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC------------ 306
S CY C GH +++C GG +R E C+ C TGHFARDC
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGAT 159
Query: 307 KEEADRCYRCNGTGHIARECAQSP------------DEPSCYNCNKTGHIARNCPE---- 438
K D CY C GH+AR+C Q CY C GH AR+C +
Sbjct: 160 KGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAA 219
Query: 439 GGRES---ATQTCYNCNKSGHISRNCP---DGTKTCYVCGKPGHISRECDE 573
G S + TCY+C GHI+R+C ++ CY CG GH++R+CD+
Sbjct: 220 GNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQ 270
Score = 58.8 bits (136), Expect = 3e-09
Identities = 35/97 (36%), Positives = 46/97 (47%), Gaps = 30/97 (30%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQ--------------------GGV--VSRDSGFNRQREK-CFKCN 279
CY C GHFAR+CTQ GGV ++RD RQ + C++C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 280 RTGHFARDCKEEA-------DRCYRCNGTGHIARECA 369
+GH ARDC + + CY+C GH AREC+
Sbjct: 260 GSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 318
CY+C +GH AR+C Q G SG C+KC + GHFAR+C A
Sbjct: 255 CYQCGGSGHLARDCDQRG-----SGGGGNDNACYKCGKEGHFARECSSVA 299
Score = 35.1 bits (77), Expect = 0.040
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 157 SSSVCYKCNRTGHFARECT 213
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 514 GTKTCYVCGKPGHISREC 567
G CY CG+ GHIS++C
Sbjct: 98 GGSGCYNCGELGHISKDC 115
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 109 bits (261), Expect = 2e-24
Identities = 59/168 (35%), Positives = 77/168 (45%), Gaps = 35/168 (20%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK------------- 309
CY C GHFAR+C Q G + G R C+ C GH A+DC+
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSCGEVGHLAKDCRGGSGGNRYGGGGG 190
Query: 310 --EEADRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRES 453
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG
Sbjct: 191 RGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GG 249
Query: 454 ATQTCYNCNKSGHISRNCP----------DGTKTCYVCGKPGHISREC 567
+ CY C +GH++R+C G+ C++CGK GH +REC
Sbjct: 250 GGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 94.7 bits (225), Expect = 5e-20
Identities = 55/177 (31%), Positives = 76/177 (42%), Gaps = 39/177 (22%)
Frame = +1
Query: 157 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKCNRTGHFARDCKEEAD- 321
S C+ C GH A++C G G S G R+ +C+ C GHFARDC++
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGG 151
Query: 322 ----------RCYRCNGTGHIAREC-------------AQSPDEPSCYNCNKTGHIARNC 432
CY C GH+A++C + CY C GH AR+C
Sbjct: 152 NSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDC 211
Query: 433 PEGGRES---ATQTCYNCNKSGHISRNCPD--------GTKTCYVCGKPGHISRECD 570
+ G + TCY C GHI++ C G + CY CG GH++R+CD
Sbjct: 212 RQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCD 268
Score = 75.4 bits (177), Expect = 3e-14
Identities = 52/156 (33%), Positives = 64/156 (41%), Gaps = 43/156 (27%)
Frame = +1
Query: 229 SRDSGFNRQREKCFKCNRTGHFARDCKEEA----------------DRCYRCNGTGHIAR 360
SR SG N CF C GH A+DC + CY C GH AR
Sbjct: 89 SRGSGGN-----CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFAR 143
Query: 361 ECAQSPDEPS---------CYNCNKTGHIARNC----------PEGGRESATQTCYNCNK 483
+C QS S CY+C + GH+A++C GGR S CY C
Sbjct: 144 DCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGG 203
Query: 484 SGHISRNCPD--------GTKTCYVCGKPGHISREC 567
GH +R+C G TCY CG GHI++ C
Sbjct: 204 VGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVC 239
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Frame = +1
Query: 163 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE--------- 315
S CY C GH A+ CT + S G R C++C TGH ARDC
Sbjct: 224 STCYTCGGVGHIAKVCTSK-IPSGGGGGGRA---CYECGGTGHLARDCDRRGSGSSGGGG 279
Query: 316 -ADRCYRCNGTGHIAREC 366
+++C+ C GH AREC
Sbjct: 280 GSNKCFICGKEGHFAREC 297
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/50 (48%), Positives = 29/50 (58%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 318
CY+C TGH AR+C + G S SG KCF C + GHFAR+C A
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKEGHFARECTSVA 301
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +1
Query: 388 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 567
+C+NC + GH+A++C +GG + +SG G CY+CG GH +R+C
Sbjct: 95 NCFNCGEVGHMAKDC-DGGSGGKSFGGGGGRRSG--------GEGECYMCGDVGHFARDC 145
Query: 568 DEA 576
++
Sbjct: 146 RQS 148
Score = 32.3 bits (70), Expect = 0.28
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 160 SSVCYKCNRTGHFARECT 213
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 98.3 bits (234), Expect = 4e-21
Identities = 49/136 (36%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Frame = +1
Query: 163 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 342
++C C R GHFAR+C+ V C C GH A +C E+ RC+ C
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV-------------CNNCGLPGHIAAECTAES-RCWNCRE 100
Query: 343 TGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGHISRNCPDGT 519
GH+A C+ +E C++C K+GH AR+C R + C NC K GH++ +C +
Sbjct: 101 PGHVASNCS---NEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTN-D 156
Query: 520 KTCYVCGKPGHISREC 567
K C C GHI+R+C
Sbjct: 157 KACKNCRTSGHIARDC 172
Score = 85.4 bits (202), Expect = 3e-17
Identities = 43/111 (38%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Frame = +1
Query: 253 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 432
Q C C R GHFARDC C C GHIA EC E C+NC + GH+A NC
Sbjct: 53 QGNLCNNCKRPGHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNC 108
Query: 433 PEGGRESATQTCYNCNKSGHISRNCPDG------TKTCYVCGKPGHISREC 567
G C++C KSGH +R+C + + C C K GH++ +C
Sbjct: 109 SNEG------ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC 153
Score = 82.6 bits (195), Expect = 2e-16
Identities = 51/149 (34%), Positives = 76/149 (51%), Gaps = 8/149 (5%)
Frame = +1
Query: 157 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 336
+ +C+ C ++GH AR+C+ SR +G R CFK GH A DC + C C
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK---QGHLAADCTND-KACKNC 162
Query: 337 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG---RESATQTCYNCNKSGHISRNC 507
+GHIAR+C ++P C C+ +GH+AR+CP+G + ++ + G +SR
Sbjct: 163 RTSGHIARDCR---NDPVCNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGLSRMS 219
Query: 508 PD--GTKT---CYVCGKPGHISRECDEAR 579
D G C+ CG GH + EC AR
Sbjct: 220 RDREGVSAMIICHNCGGRGHRAYECPSAR 248
Score = 79.0 bits (186), Expect = 2e-15
Identities = 47/130 (36%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Frame = +1
Query: 163 SVCYKCNRTGHFARECTQGGVV--SRDSGF---NRQREK-CFKCNRTGHFARDCKEEADR 324
SVC C GH A ECT R+ G N E C C ++GH ARDC R
Sbjct: 74 SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSR 133
Query: 325 ------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 486
C C GH+A +C ++ +C NC +GHIAR+C C C+ S
Sbjct: 134 AGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDCRN------DPVCNICSIS 184
Query: 487 GHISRNCPDG 516
GH++R+CP G
Sbjct: 185 GHVARHCPKG 194
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 81.0 bits (191), Expect = 6e-16
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 18/126 (14%)
Frame = +1
Query: 259 EKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKT 411
E CF C+ H A+ C E+++ C +C GH + C + +E S CYNC T
Sbjct: 74 EGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDT 133
Query: 412 GHIARNCPEGGRESATQ--TCYNCNKSGHISRNCPDGTK-------TCYVCGKPGHISRE 564
GH +CP + T+ +C+ C GHIS+NCP+ C VCG H+ ++
Sbjct: 134 GHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKD 193
Query: 565 CDEARN 582
C + N
Sbjct: 194 CPDKFN 199
Score = 58.0 bits (134), Expect = 5e-09
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Frame = +1
Query: 232 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC-NGTGHIARECAQSPDEPSCYNCNK 408
+D ++++ FK + G DR R + T H R P E C+ C+
Sbjct: 30 KDPNKKKKKKSLFKKKKPG-------SSTDRPQRTGSSTRHPLRVPGMKPGE-GCFICHS 81
Query: 409 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGT------KTCYVCGKPGHISREC 567
HIA+ CPE + C C + GH +NCP+ K CY CG GH C
Sbjct: 82 KTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHC 140
Score = 54.4 bits (125), Expect = 6e-08
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Frame = +1
Query: 160 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD------ 321
+ +C +C R GH + C + + + +++ C+ C TGH C +
Sbjct: 98 NKICLQCRRRGHSLKNCPE------KNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKF 151
Query: 322 -RCYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRESATQ 462
C+ C G GHI++ C ++ P C C H+ ++CP+ + + Q
Sbjct: 152 ASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPDKFNQESAQ 204
Score = 35.5 bits (78), Expect = 0.030
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +1
Query: 466 CYNCNKSGHISRNCPDGT-----KTCYVCGKPGHISRECDEARN*PQPPCLPYN 612
C+ C+ HI++ CP+ + K C C + GH + C E N L YN
Sbjct: 76 CFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYN 129
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 80.6 bits (190), Expect = 8e-16
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Frame = +1
Query: 151 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNRTGHFARDCKEEAD 321
A + + CYKC + GH+AR+CT V D+G + CFKC + GH++RDC ++
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQS- 287
Query: 322 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP--------EGGR---ESATQTC 468
+ + S CY C K GH +R+C + G+ S+T C
Sbjct: 288 -----GNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDC 342
Query: 469 YNCNKSGHISRNCPDGTKTCYVCGK 543
Y C K+GH SR+C +T GK
Sbjct: 343 YKCGKAGHWSRDCTSPAQTTNTPGK 367
Score = 48.0 bits (109), Expect = 5e-06
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Frame = +1
Query: 385 PSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCPDGTKT-----------C 528
P+ Y+ K + + G + + T T CY C K GH +R+C + T C
Sbjct: 211 PTSYSVTKNSNFGDSDTRGYQNAKTGTPCYKCGKEGHWARDCTVQSDTGPVKSTSAAGDC 270
Query: 529 YVCGKPGHISREC 567
+ CGKPGH SR+C
Sbjct: 271 FKCGKPGHWSRDC 283
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 64.5 bits (150), Expect = 6e-11
Identities = 41/142 (28%), Positives = 56/142 (39%), Gaps = 7/142 (4%)
Frame = +1
Query: 118 VLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA 297
+L E+SK + CY C GH C + G C++C + GH
Sbjct: 247 ILCKYEYSKE-DLKDVQCYICKSFGHLC--CVEPG------NSLSWAVSCYRCGQLGHSG 297
Query: 298 RDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-------GRESA 456
C + + S + CY C + GH AR CP GRES
Sbjct: 298 LACGRHYEESNENDSA--TPERLFNSREASECYRCGEEGHFARECPNSSSISTSHGRESQ 355
Query: 457 TQTCYNCNKSGHISRNCPDGTK 522
T CY CN SGH +R CP+ ++
Sbjct: 356 T-LCYRCNGSGHFARECPNSSQ 376
Score = 63.7 bits (148), Expect = 1e-10
Identities = 56/220 (25%), Positives = 77/220 (35%), Gaps = 38/220 (17%)
Frame = +1
Query: 22 DGGWLPCYRSVINYNLFVNS*DN*SLNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFA 201
D GW+ CY + N + + + + E CY C +TGH A
Sbjct: 162 DAGWVSCYSCGEQGHTSFNC-PTPTKRRKPCFICGSLEHGAKQCSKGHDCYICKKTGHRA 220
Query: 202 RECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR-------CYRCNGTGHIAR 360
++C +G + C +C GH CK E + CY C GH+
Sbjct: 221 KDCPD----KYKNG--SKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHL-- 272
Query: 361 ECAQSPDEP-----SCYNCNKTGHIARNC-----PEGGRESAT----------QTCYNCN 480
C P SCY C + GH C +SAT CY C
Sbjct: 273 -CCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCG 331
Query: 481 KSGHISRNCPDGTKT-----------CYVCGKPGHISREC 567
+ GH +R CP+ + CY C GH +REC
Sbjct: 332 EEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFAREC 371
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/77 (33%), Positives = 38/77 (49%)
Frame = +1
Query: 160 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCN 339
+S CY+C GHFAREC +S G + C++CN +GHFAR+C + R
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSGHFARECPNSSQVSKRDR 382
Query: 340 GTGHIARECAQSPDEPS 390
T + + + E S
Sbjct: 383 ETSTTSHKSRKKNKENS 399
Score = 54.0 bits (124), Expect = 8e-08
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +1
Query: 388 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 567
SCY+C + GH + NCP + + C+ C H ++ C G CY+C K GH +++C
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKR--RKPCFICGSLEHGAKQCSKG-HDCYICKKTGHRAKDC 223
Query: 568 -DEARN 582
D+ +N
Sbjct: 224 PDKYKN 229
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 157 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNR 282
S ++CY+CN +GHFAREC VS RD + K K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 61.7 bits (143), Expect = 4e-10
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Frame = +1
Query: 310 EEADRCYRCNGTGHIARECAQSPDEPS-----CYNCNKTGHIARNCPEGGR-ESATQTCY 471
+EA+ C RC G GH C CY CN GH+ C E G +S T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 472 NCNKSGHISRNC-----PDGTKTCYVCGKPGHISREC 567
C + GH C + +C++CG+ GH +C
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQC 117
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Frame = +1
Query: 253 QREKCFKCNRTGHFARDCKEEAD-------RCYRCNGTGHIARECAQSPDEP-----SCY 396
+ E C +C GH CK E +CY CN GH+ C P SCY
Sbjct: 24 EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHL---CCIEPGHTQSWTVSCY 80
Query: 397 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCY 531
C + GH C +S + +C+ C + GH C + C+
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCF 125
Score = 50.8 bits (116), Expect = 8e-07
Identities = 40/143 (27%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 348
CY+C + GH C G DS CF C R GHF C C+ + +
Sbjct: 79 CYRCGQLGHTGLAC---GRHYDDS----VSPSCFICGREGHFEHQCHNSFSVCFPEDSSE 131
Query: 349 HIARECAQSPDEPSCYNCNKT-----GHIARNCPEGGRE-----SATQTCYNCNKSGHIS 498
EC Q PD S T GH CP+ S + + N S +
Sbjct: 132 D---EC-QGPDSSSVRFQENTREEEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKST 187
Query: 499 RNCPDGTKTCYVCGKPGHISREC 567
+ + CY C GHI+R+C
Sbjct: 188 SKGRETRRLCYECKGKGHIARDC 210
Score = 42.7 bits (96), Expect = 2e-04
Identities = 32/131 (24%), Positives = 44/131 (33%), Gaps = 10/131 (7%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD-----RCYR 333
CY CN GH C + G C++C + GH C D C+
Sbjct: 55 CYVCNSLGHLC--CIEPGHT------QSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFI 106
Query: 334 CNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHIS 498
C GH +C S P++ S C + E RE + GH
Sbjct: 107 CGREGHFEHQCHNSFSVCFPEDSSEDECQGPDSSSVRFQENTRE---------EEEGHFE 157
Query: 499 RNCPDGTKTCY 531
CPD + C+
Sbjct: 158 HQCPDSSSVCF 168
Score = 37.9 bits (84), Expect = 0.006
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +1
Query: 157 SSSVCYKCN----RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR 324
SSSV ++ N GHF +C V +R+ E N + +E
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCFQE-ISRE-EGFISLNSSSKSTSKGRETRRL 196
Query: 325 CYRCNGTGHIARECAQS 375
CY C G GHIAR+C S
Sbjct: 197 CYECKGKGHIARDCPNS 213
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 94 SLNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 228
S + +IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 172 SREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 54.0 bits (124), Expect = 8e-08
Identities = 39/140 (27%), Positives = 56/140 (40%), Gaps = 12/140 (8%)
Frame = +1
Query: 184 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARE 363
+TG F++ ++ RD + QR K + AR E+ + + N R
Sbjct: 200 KTGLFSKRMK---IIHRDPVLHAQRVAAIKKAKGTPAARKHASESMKAFFSNPVNREQRS 256
Query: 364 CAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCYNCNKSGHISRNCP-------DGT 519
+ + C NC + GH CPE G + + C C GH R CP G
Sbjct: 257 LSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGI 316
Query: 520 KT----CYVCGKPGHISREC 567
T C +CG+ GH SR C
Sbjct: 317 STRYHKCGICGERGHNSRTC 336
Score = 40.7 bits (91), Expect = 8e-04
Identities = 35/125 (28%), Positives = 46/125 (36%), Gaps = 11/125 (8%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD--------- 321
C C + GH C + G + D F +C C GH R C +
Sbjct: 266 CKNCGQEGHRRHYCPELGT-NADRKF-----RCRGCGGKGHNRRTCPKSKSIVTKGISTR 319
Query: 322 --RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHI 495
+C C GH +R C + P+ N + +G N E G T C C K GH
Sbjct: 320 YHKCGICGERGHNSRTCRK----PTGVNPSCSGE---NSGEDGVGKITYACGFCKKMGHN 372
Query: 496 SRNCP 510
R CP
Sbjct: 373 VRTCP 377
Score = 39.9 bits (89), Expect = 0.001
Identities = 39/124 (31%), Positives = 46/124 (37%), Gaps = 11/124 (8%)
Frame = +1
Query: 265 CFKCNRTGHFARDCKE---EADRCYRCNGTG---HIARECAQSPDEPSCYNCNKTGHIAR 426
C C + GH C E ADR +RC G G H R C +S + + H
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVT-KGISTRYHKCG 324
Query: 427 NCPEGGRESAT---QTCYNCNKSGHISRNCPDG--TKTCYVCGKPGHISRECDEARN*PQ 591
C E G S T T N + SG S G T C C K GH R C +
Sbjct: 325 ICGERGHNSRTCRKPTGVNPSCSGENSGEDGVGKITYACGFCKKMGHNVRTCPSKQVSDS 384
Query: 592 PPCL 603
CL
Sbjct: 385 DSCL 388
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 262 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 378
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 47.6 bits (108), Expect = 7e-06
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Frame = +1
Query: 409 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 561
T +R P G R++ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 562 ECDEARN*PQP 594
C +N P P
Sbjct: 135 NC---KNSPSP 142
Score = 47.6 bits (108), Expect = 7e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +1
Query: 322 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 432
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 376 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 507
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 160 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 309
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 98 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 137
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 262 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 378
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 47.6 bits (108), Expect = 7e-06
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Frame = +1
Query: 409 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 561
T +R P G R++ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 562 ECDEARN*PQP 594
C +N P P
Sbjct: 94 NC---KNSPSP 101
Score = 47.6 bits (108), Expect = 7e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +1
Query: 322 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 432
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 376 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 507
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 160 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 309
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 57 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 96
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 262 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 378
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 316 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 474
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 48.0 bits (109), Expect = 5e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 376 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 522
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 100
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +1
Query: 409 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 561
T +R P G R+ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 93
Query: 562 EC 567
C
Sbjct: 94 NC 95
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 333
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 60 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 104
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 262 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 378
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 70 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 110
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 316 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 474
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 48.0 bits (109), Expect = 5e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 376 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 522
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 111
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +1
Query: 409 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 561
T +R P G R+ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 104
Query: 562 EC 567
C
Sbjct: 105 NC 106
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 333
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 71 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 115
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 262 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 378
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 316 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 474
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 48.0 bits (109), Expect = 5e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 376 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 522
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 141
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Frame = +1
Query: 409 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISR 561
T +R P G R+ ++ C+NC GH +R+C G CY CG+ GHI R
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIER 134
Query: 562 EC 567
C
Sbjct: 135 NC 136
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 333
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 101 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 145
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Frame = +1
Query: 379 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGHISRNCPDGTKT-------CYV 534
D +CY C K GH AR+C + +A TCY C++ GH S CP+ CY
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYW 91
Query: 535 CGKPGH 552
CG H
Sbjct: 92 CGNQDH 97
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = +1
Query: 325 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRESATQT--CYNCNKS 486
CY+C GH AR C P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 487 GH 492
H
Sbjct: 96 DH 97
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = +1
Query: 460 QTCYNCNKSGHISRNCPDGTK------TCYVCGKPGHISRECDEAR 579
+ CY C K GH +R+C T+ TCY C + GH S C R
Sbjct: 34 RACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKR 79
Score = 37.1 bits (82), Expect = 0.010
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 348
CYKC + GHFAR C VV++ + C+ C+ GH + C + R + N G
Sbjct: 36 CYKCGKLGHFARSC---HVVTQPT---TAYITCYFCSEEGHRSNGCPNK--RTDQVNPKG 87
Query: 349 H 351
H
Sbjct: 88 H 88
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 48.4 bits (110), Expect = 4e-06
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Frame = +1
Query: 217 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRC------------YRCNGTGHIAR 360
GG R G R C+KC GH ARDC E Y G G+
Sbjct: 116 GGYGGRGGG-GRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGG 174
Query: 361 ECAQSPDEPSCYNCNKTGHIARNCPEGGR 447
SCY+C ++GH AR+C GGR
Sbjct: 175 GRGGGGGGGSCYSCGESGHFARDCTSGGR 203
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +1
Query: 163 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA--RDCKEEADRCYRC 336
S CYKC GH AR+C++GG G + G+ R CY C
Sbjct: 129 SDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSC 188
Query: 337 NGTGHIAREC 366
+GH AR+C
Sbjct: 189 GESGHFARDC 198
Score = 41.1 bits (92), Expect = 6e-04
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = +1
Query: 391 CYNCNKTGHIARNCPEGGRESATQTC-------YNCNKSGHIS--RNCPDGTKTCYVCGK 543
CY C + GH+AR+C EGG Y G+ R G +CY CG+
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 544 PGHISREC 567
GH +R+C
Sbjct: 191 SGHFARDC 198
Score = 37.5 bits (83), Expect = 0.008
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGG 222
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 35.1 bits (77), Expect = 0.040
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 514 GTKTCYVCGKPGHISRECDE 573
G CY CG+PGH++R+C E
Sbjct: 127 GGSDCYKCGEPGHMARDCSE 146
Score = 31.1 bits (67), Expect = 0.65
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 439 GGRESATQTCYNCNKSGHISRNCPDG 516
GG CY C + GH++R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +1
Query: 217 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--S 390
GG S G CFKC GH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 391 CYNCNKTGHIARNCPEGG 444
CY+C ++GH AR+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +1
Query: 325 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 504
C++C GH+AREC+Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 505 CPDG 516
C G
Sbjct: 195 CTSG 198
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQ-GGVVSRDSGFNRQRE-----------KCFKCNRTGHFARDC 306
C+KC GH AREC+Q GG S G R C+ C +GHFARDC
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +1
Query: 388 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 567
SC+ C + GH+AR C +GG + SG G +CY CG+ GH +R+C
Sbjct: 137 SCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGG-GGGGGGGGLSCYSCGESGHFARDC 195
Score = 37.5 bits (83), Expect = 0.008
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGG 222
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 34.7 bits (76), Expect = 0.053
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 514 GTKTCYVCGKPGHISRECDE 573
G +C+ CG+PGH++REC +
Sbjct: 134 GDNSCFKCGEPGHMARECSQ 153
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +1
Query: 412 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 516
G+ R G +C+ C + GH++R C G
Sbjct: 120 GYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQG 154
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +1
Query: 463 TCYNCNKSGHISRNCPDGT---KTCYVCGKPGHISREC 567
TCY+C + HI+ +CP T K+C++C H +R+C
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFICASLEHGARQC 181
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/84 (21%), Positives = 26/84 (30%)
Frame = +1
Query: 331 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 510
+ I C + DE N + R E G ++ +
Sbjct: 85 KLEAANEIVTHCVERQDED-----NMVEDVVRGEEEDGETTSNSVMTKLLRGARYFDPLD 139
Query: 511 DGTKTCYVCGKPGHISRECDEARN 582
G TCY CG+ HI+ C N
Sbjct: 140 AGWVTCYSCGEKDHITVSCPTLTN 163
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +1
Query: 217 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 321
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.50
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGG 222
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.65
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 382 EPSCYNCNKTGHIARNCPEGG 444
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 286 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 384
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 403 NKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 567
NK + + P+ G E Q K G S C+ C +PGH +R+C
Sbjct: 80 NKVISVNKAEPKVGGEDVDQL----KKGGGYSSRGKGTEDECFKCRRPGHWARDC 130
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +1
Query: 217 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 321
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.50
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGG 222
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.65
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 382 EPSCYNCNKTGHIARNCPEGG 444
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 286 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 384
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 403 NKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 567
NK + + P+ G E Q K G S C+ C +PGH +R+C
Sbjct: 80 NKVISVNKAEPKVGGEDVDQL----KKGGGYSSRGKGTEDECFKCRRPGHWARDC 130
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 9/40 (22%)
Frame = +1
Query: 232 RDSGFNRQREK---------CFKCNRTGHFARDCKEEADR 324
RD G++R R + CFKC + GHFAR+C E+ R
Sbjct: 100 RDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSR 139
Score = 34.3 bits (75), Expect = 0.070
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGGVVSRDSG 243
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 33.1 bits (72), Expect = 0.16
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 514 GTKTCYVCGKPGHISREC 567
G C+ CGKPGH +REC
Sbjct: 116 GGGDCFKCGKPGHFAREC 133
Score = 30.7 bits (66), Expect = 0.87
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +1
Query: 391 CYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGTK 522
C+ C K GH AR CP GGR S+ Y+ + +++ G K
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAK 169
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 214 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 366
QGG RD+ +R R++ + +R+ C++C GH AREC
Sbjct: 87 QGGA-GRDNDGDRGRDRGYDRDRSRPSGG---RGGGDCFKCGKPGHFAREC 133
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 154 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 258
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 214 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 309
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 226 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 366
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 379 DEPSCYNCNKTGHIARNCPEG 441
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 526 CYVCGKPGHISRECDEAR 579
CY CG+ GH +REC R
Sbjct: 91 CYECGELGHFARECRRGR 108
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +1
Query: 439 GGRESATQT--CYNCNKSGHISRNCPDG 516
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 154 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 258
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 214 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 309
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 226 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 366
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 379 DEPSCYNCNKTGHIARNCPEG 441
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 526 CYVCGKPGHISRECDEAR 579
CY CG+ GH +REC R
Sbjct: 91 CYECGELGHFARECRRGR 108
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +1
Query: 439 GGRESATQT--CYNCNKSGHISRNCPDG 516
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 258
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 33.9 bits (74), Expect = 0.093
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1
Query: 262 KCFKCNRTGHFARDCK 309
KC++C TGHFAR+C+
Sbjct: 100 KCYECGETGHFARECR 115
Score = 31.5 bits (68), Expect = 0.50
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 439 GGRESATQTCYNCNKSGHISRNC 507
GGR + CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.1 bits (67), Expect = 0.65
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 322 RCYRCNGTGHIAREC 366
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 391 CYNCNKTGHIARNCPEGG 444
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 526 CYVCGKPGHISREC 567
CY CG+ GH +REC
Sbjct: 101 CYECGETGHFAREC 114
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 37.1 bits (82), Expect = 0.010
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 253 QREKCFKCNRTGHFARDC 306
Q+EKCF C +TGHFA DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 352 IARECAQSP-DEPSCYNCNKTGHIARNCP 435
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 6.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 508 PDGTKTCYVCGKPGHISREC 567
P + C+VCG+ GH + +C
Sbjct: 259 PGQQEKCFVCGQTGHFASDC 278
Score = 27.9 bits (59), Expect = 6.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 169 CYKCNRTGHFAREC 210
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.030
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 169 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 258
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 217 GGVVSRDSGFNRQRE--KCFKCNRTGHFARDCK 309
GG D G R KC++C +GHFAR+C+
Sbjct: 80 GGRGGGDGGRGRGGSDLKCYECGESGHFARECR 112
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 442 GRESATQTCYNCNKSGHISRNC 507
GR + CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 322 RCYRCNGTGHIAREC 366
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 526 CYVCGKPGHISREC 567
CY CG+ GH +REC
Sbjct: 98 CYECGESGHFAREC 111
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 391 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 510
CY C ++GH AR C G + + ++S R P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 35.1 bits (77), Expect = 0.040
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +1
Query: 265 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 435
CF C + GH RDC E D R + +I+ + C C + H A CP
Sbjct: 604 CFYCGKKGHCLRDCLEVTDTELR-DLVQNISVRNGREEASSLCIRCFQLSHWAATCP 659
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 16/73 (21%)
Frame = +1
Query: 343 TGHIARECAQSPDEPSCYNCNKTGHIARNCPE----------------GGRESATQTCYN 474
+G +A + + C+ C K GH R+C E GRE A+ C
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIR 647
Query: 475 CNKSGHISRNCPD 513
C + H + CP+
Sbjct: 648 CFQLSHWAATCPN 660
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Frame = +1
Query: 166 VCYKCNRTGHFARECTQ------GGVVSRDSGFNRQREK---CFKCNRTGHFARDC 306
+C+ C + GH R+C + +V S N + E C +C + H+A C
Sbjct: 603 ICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIRCFQLSHWAATC 658
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 35.1 bits (77), Expect = 0.040
Identities = 33/148 (22%), Positives = 51/148 (34%), Gaps = 11/148 (7%)
Frame = +1
Query: 157 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNR-QREKCFKCNRTGHFARDCKEEADRCYR 333
+S Y N T E GG + G + +R C++C GH + C +
Sbjct: 444 NSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIKLQNTSH 503
Query: 334 CNGT-GHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT------CYNCNKSGH 492
N T H E P + + Y+ K N + + T N
Sbjct: 504 TNSTLDHQTVEA--GPTQVTSYSLQKKTRDTENNGGSFMDESYATVPISIDVTNGANDAS 561
Query: 493 ISRNCPDG---TKTCYVCGKPGHISREC 567
++ G + CY CG+ GH+S C
Sbjct: 562 LTSAVSTGKIKKRNCYECGEKGHLSSAC 589
Score = 33.5 bits (73), Expect = 0.12
Identities = 22/105 (20%), Positives = 36/105 (34%)
Frame = +1
Query: 253 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 432
+R C++C GH + C + + + +E Y K +
Sbjct: 393 KRRVCYECGEKGHLSTACPIKLQKADD-QANSKLGQETVDGRPAMQSYGLPKNSGDSYYM 451
Query: 433 PEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 567
E ++T YN S + CY CG+ GH+S C
Sbjct: 452 NE--TYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTAC 494
Score = 30.7 bits (66), Expect = 0.87
Identities = 33/160 (20%), Positives = 55/160 (34%), Gaps = 8/160 (5%)
Frame = +1
Query: 58 NYNLFVNS*DN*SLNDRYISVLSAQE--FSKPIAMSSSV----CYKCNRTGHFARECT-- 213
+Y L NS D+ +N+ Y S +S + V CY+C GH + C
Sbjct: 438 SYGLPKNSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIK 497
Query: 214 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSC 393
+S + Q + T + + + + NG + A P
Sbjct: 498 LQNTSHTNSTLDHQTVEAGPTQVTSYSLQKKTRDTEN----NGGSFMDESYATVPISIDV 553
Query: 394 YNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPD 513
N + G + + CY C + GH+S CP+
Sbjct: 554 TNGANDASLTSAVSTG--KIKKRNCYECGEKGHLSSACPN 591
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.7 bits (76), Expect = 0.053
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 259 EKCFKCNRTGHFARDC 306
++CFKC R GH+ARDC
Sbjct: 126 DECFKCGRVGHWARDC 141
Score = 32.7 bits (71), Expect = 0.21
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGG 222
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.28
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 382 EPSCYNCNKTGHIARNCPEGG 444
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +1
Query: 439 GGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 576
GGR+S + G G C+ CG+ GH +R+C A
Sbjct: 99 GGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDCPSA 144
Score = 27.5 bits (58), Expect = 8.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 319 DRCYRCNGTGHIAREC 366
D C++C GH AR+C
Sbjct: 126 DECFKCGRVGHWARDC 141
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +1
Query: 391 CYNCNKTGHIARNC-------PEGGRESATQTCYNCNKSGHISRNCPDG 516
C+NC H+ARNC P+ S + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +1
Query: 325 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 459
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 397 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 522
+ +++G + GG AT +C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCPGATK 430
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 472 NCNKSGHISRNCPDG--TKTCYVCGKPGHISRECDEA 576
+ ++SG + G T +C VCG GH+S +C A
Sbjct: 392 HAHQSGQSGNHYSGGGATTSCNVCGNSGHVSAKCPGA 428
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 33.1 bits (72), Expect = 0.16
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 265 CFKCNRTGHFARDCKEEA 318
CFKC R GH++RDC A
Sbjct: 8 CFKCGRPGHWSRDCPSSA 25
Score = 31.5 bits (68), Expect = 0.50
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 448 ESATQTCYNCNKSGHISRNCP 510
ESA C+ C + GH SR+CP
Sbjct: 2 ESAPTGCFKCGRPGHWSRDCP 22
Score = 30.3 bits (65), Expect = 1.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 526 CYVCGKPGHISREC 567
C+ CG+PGH SR+C
Sbjct: 8 CFKCGRPGHWSRDC 21
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQGGVVS 231
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +1
Query: 391 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 504
C+ C + GH +R+CP + + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +3
Query: 378 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 521
G +VV LQ DGPH ++R G AD+L Q P L + +H+
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHR 625
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 322 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 444
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.3 bits (70), Expect = 0.28
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 445 RESATQTCYNCNKSGHISRNCPD 513
RES +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 29.1 bits (62), Expect = 2.6
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 523 TCYVCGKPGHISRECDEAR 579
+C++CGK GH + +C + R
Sbjct: 727 SCFICGKSGHRATDCPDKR 745
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 388 SCYNCNKTGHIARNCPE 438
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 31.9 bits (69), Expect = 0.37
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 253 QREKCFKCNRTGHFARDCK 309
Q+E+CF C + GHFA +C+
Sbjct: 260 QQERCFLCGQMGHFASNCE 278
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +1
Query: 352 IARECAQSPDEPS-CYNCNKTGHIARNC 432
I RE +P + C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 31.5 bits (68), Expect = 0.50
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 433 PEGGRESATQTCYNCNKSGHISRNC 507
P + A + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 31.5 bits (68), Expect = 0.50
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 496 SRNCPDGTKTCYVCGKPGHISREC 567
S D K CY C K GH++R+C
Sbjct: 916 SEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.87
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 166 VCYKCNRTGHFAREC 210
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +1
Query: 265 CFKCNRTGHFARDC--KEEAD 321
C++C + GH ARDC KE +D
Sbjct: 926 CYRCKKVGHLARDCHGKETSD 946
Score = 30.3 bits (65), Expect = 1.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 391 CYNCNKTGHIARNC 432
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 325 CYRCNGTGHIAREC 366
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 379 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 486
D P C+NC H R CP SA + KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +1
Query: 310 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 444
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 382 EPSCYNCNKTGHIARNCPEGGRESATQ 462
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 463 TCYNCNKSGHISRNCPDGTKTCYV 534
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 378 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 521
G +VV Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 378 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 521
G +VV Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.1 bits (67), Expect = 0.65
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +1
Query: 331 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC----PEGGRESATQTCYNCNKSGHIS 498
R + R+ A +P + C C T H+ +C P CY C GH+S
Sbjct: 268 RATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVS 326
Query: 499 RNCP 510
CP
Sbjct: 327 MYCP 330
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Frame = +1
Query: 256 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 366
+ C C T H DC + +CY C G GH++ C
Sbjct: 284 KRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYC 329
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 31.1 bits (67), Expect = 0.65
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Frame = +1
Query: 310 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 480
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 481 KSGHISRNCPD----GTKTCYVCGKPGHI 555
G + CP G C C G +
Sbjct: 256 GKGKLP--CPTCQSRGLIKCQTCDSTGSL 282
>At5g08730.1 68418.m01037 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster]
Length = 500
Score = 30.7 bits (66), Expect = 0.87
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +1
Query: 430 CPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 576
CP G E A + + N+ IS C G C+ CG H C +A
Sbjct: 169 CPASGCEYAVELQEDGNEDNVISVVCLCGHTFCWTCGLESHRPVSCKKA 217
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 30.7 bits (66), Expect = 0.87
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +1
Query: 298 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 474
RDC+ A RCY G AR C + PS N + I E G SA ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 475 CNKS 486
C S
Sbjct: 181 CKSS 184
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = +1
Query: 466 CYNCNKSGHISRNCPDGTKT------CYVCGKPGHISREC 567
C C + GH CP T T C +CG GH + +C
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +1
Query: 379 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 510
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = +1
Query: 466 CYNCNKSGHISRNCPDGTKT------CYVCGKPGHISREC 567
C C + GH CP T T C +CG GH + +C
Sbjct: 363 CRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDC 402
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +1
Query: 379 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 510
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 331 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 444
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 166 VCYKCNRTGHFARECTQGG 222
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 457 TQTCYNCNKSGHISRNCPD 513
T+ C +CN +GH SR CP+
Sbjct: 2 TRRCSHCNHNGHNSRTCPN 20
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 391 CYNCNKTGHIARNCPEGG 444
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 139 SKPIAMSSSVCYKCNRTGHFAREC 210
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 319 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGH 492
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 493 ISRNC 507
IS+ C
Sbjct: 282 ISKPC 286
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 1.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 166 VCYKCNRTGHFARECTQGG 222
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 352 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 504
++R+ ++S E +C+ C + GH +CP E + Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +1
Query: 388 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK-TCYVCGKPGHISRE 564
S N N + + G + + + +S R+ G K C++CG+ GH +
Sbjct: 114 SVENQNLRKKLMKEKTAAGYKETAEELHVRRRSVSRDRSKSKGEKGACWICGEDGHYKND 173
Query: 565 CDEARN*PQP 594
C +RN +P
Sbjct: 174 C-PSRNSEKP 182
>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 373
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Frame = +1
Query: 358 RECAQSPDEPSCYNCNKTGHIARNCPE---GGRESAT---QTCYNCNKSGHISRN----- 504
R C + C NC H +C E GRE T + C +C +S
Sbjct: 267 RRCCYKCRKHFCINCKVPWHSNLSCKEHKSSGREPITTVWRQCRSCLHKIKLSEERMPVT 326
Query: 505 CPDGTKTCYVCG 540
C G K CY CG
Sbjct: 327 CRCGYKFCYACG 338
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 457 TQTCYNCNKSGHISRNCPD-GTKTCYVCGKPG 549
T+ C +C+ +GH SR CP G TC G G
Sbjct: 2 TRRCSHCSNNGHNSRTCPTRGGGTCGGSGGGG 33
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +1
Query: 310 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 447
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 379 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 522
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +1
Query: 262 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 396
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +1
Query: 310 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 447
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 379 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 522
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +1
Query: 262 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 396
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 307 KEEADRCYRCNGTGHIARECAQSP 378
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 265 CFKCNRTGHFARDC 306
CFKC T H A+DC
Sbjct: 342 CFKCGSTDHIAKDC 355
Score = 27.5 bits (58), Expect = 8.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 169 CYKCNRTGHFARECTQG 219
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +1
Query: 412 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP 510
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +1
Query: 391 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCG 540
C +C + GH + NCP S N + RN + T +C CG
Sbjct: 767 CIHCQQRGHASTNCP-----SRVPASRNSRPTATNPRN-DESTVSCNTCG 810
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Frame = +1
Query: 472 NCNKSGHISRNCPDGTKTCYVCGKPGHISRECDE----ARN*PQPP 597
N S I + CY CG GH+S EC + R P PP
Sbjct: 136 NGRASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRERPPPP 181
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 127 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 237
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 4.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 310 EEADRCYRCNGTGHIARECAQS 375
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 4.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 379 DEPSCYNCNKTGHIARNCPE 438
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
Score = 27.5 bits (58), Expect = 8.1
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 466 CYNCNKSGHISRNCP 510
CY C GH+S CP
Sbjct: 154 CYECGDEGHLSYECP 168
>At2g16690.1 68415.m01915 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 240
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 217 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 306
G VVS + R R++CF C R H DC
Sbjct: 188 GEVVSVTFDYERIRKRCFFCQRLTHDKADC 217
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +1
Query: 307 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 486
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 487 GHIS 498
G ++
Sbjct: 128 GSLT 131
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Frame = +1
Query: 184 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARD---------CKEEADRCYRC 336
R+ + C + G ++ + ++E C K + A + C EE +R C
Sbjct: 778 RSNKDKQSCDKKGAKNKTRAEDDKQENCHKLSENNKTASEMLVSGTKVSCHEENNRVMNC 837
Query: 337 NGTGHIARECA 369
NG G +A E A
Sbjct: 838 NGRGSVAGEMA 848
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +1
Query: 307 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 462
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 463 TCYNCNKSGHISRNCP 510
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +1
Query: 307 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 462
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 463 TCYNCNKSGHISRNCP 510
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 418
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 217 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 306
G +VS + R R++CF C R H DC
Sbjct: 188 GEIVSVTFDYERIRKRCFLCQRLTHEKGDC 217
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 2.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 466 CYNCNKSGHISRNCPDGTKT 525
C++C++ GH ++NCP T T
Sbjct: 6 CFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 2.6
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 391 CYNCNKTGHIARNCP 435
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 154 MSSSVCYKCNRTGHFAREC 210
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 244 FNRQREKCFKCNRTGHFARDCKEEADR 324
F + KCF C + GH A DC+ + R
Sbjct: 259 FPGEEGKCFLCGQEGHRAADCEGKIKR 285
>At5g21140.1 68418.m02524 expressed protein
Length = 312
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/68 (32%), Positives = 29/68 (42%)
Frame = +1
Query: 358 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVC 537
R ++ D PSC CN+ G A CP G + C K R+ K C C
Sbjct: 187 RSWFRNNDVPSCEVCNEAGVKADLCPTEG--CPVRIHKYCLKKLLSQRD----DKRCSGC 240
Query: 538 GKPGHISR 561
GKP +S+
Sbjct: 241 GKPWPLSK 248
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 307 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 486
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 232 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 288
Query: 487 GHISRNCP 510
G + CP
Sbjct: 289 GKVM--CP 294
>At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 231
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 307 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 486
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 148 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 204
Query: 487 GHISRNCP 510
G + CP
Sbjct: 205 GKVM--CP 210
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = +1
Query: 325 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNC 432
C C+ T H EC P D CY C GH++ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Frame = +1
Query: 385 PSCYNCNKTGHIARNCPEGGRESAT-----------QTCYNCNKSGHISRNC 507
P C++C GHI C RE CY+ GHI RNC
Sbjct: 626 PVCHHCGVVGHIRPRCFRLLREKNRLMNAYDVRFHGPKCYHYGVQGHIKRNC 677
Score = 27.9 bits (59), Expect = 6.1
Identities = 23/76 (30%), Positives = 29/76 (38%)
Frame = +1
Query: 139 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 318
S+P + VC+ C GH C F REK NR + A D +
Sbjct: 618 SEPRRVFRPVCHHCGVVGHIRPRC-----------FRLLREK----NRLMN-AYDVRFHG 661
Query: 319 DRCYRCNGTGHIAREC 366
+CY GHI R C
Sbjct: 662 PKCYHYGVQGHIKRNC 677
>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|P49373
Transcription elongation factor S-II (TFIIS)
{Schizosaccharomyces pombe}; contains Pfam profile
PF01096: Transcription factor S-II (TFIIS)
Length = 378
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 502 CGRCGRTCCSYSRSASQTPAPPRDSSVRC 416
CGRCG+ C+Y + +++ P + V C
Sbjct: 340 CGRCGQRKCTYYQMQTRSADEPMTTYVTC 368
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Frame = -1
Query: 514 RRDSCGRCGRT---CCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGS 371
R+D G G + C S S P S SCC C++TA GS
Sbjct: 61 RQDDAGLSGSSTGSCSSPDSSTGSNSVPAPVPSPAPAGSCCCCSSTADSGS 111
>At2g07740.1 68415.m01002 zinc knuckle (CCHC-type) family protein
similar to zinc finger protein GB:AAA75253; some members
of this protein family have a weak CCHC zinc fingers
that is mostly from retroviral gag proteins
(nucleocapsid)
Length = 409
Score = 28.7 bits (61), Expect = 3.5
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Frame = +1
Query: 289 HFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEGGRESAT 459
HFAR C + + GT + EC + E C C GH+A CP+
Sbjct: 159 HFARVCVK-VNLKQPLKGTVVVNGECYYASYEGLNVICSLCGVFGHLAGACPKRSPGPVV 217
Query: 460 QTCYNCNKSGHISRNCPDGTKTCYVCGK 543
Q + K +S G + CGK
Sbjct: 218 QAGASPRKGNDVSSRGIGGEEIRKECGK 245
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 397 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 504
NCN H A E G E + SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 397 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 504
NCN H A E G E + SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 397 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 504
NCN H A E G E + SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612
>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +1
Query: 391 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 552
C +C+++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRSVHSANALSK--RHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGH 76
>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +1
Query: 391 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 552
C +C+++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRSVHSANALSK--RHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGH 76
>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 275
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 97 LNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGV-VSRDS 240
L +R +SA A ++S C KC + GH+ EC V +SR S
Sbjct: 77 LGERKDKTMSASAVGSS-ASAASQCQKCFQAGHWTYECKNERVYISRPS 124
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 27.9 bits (59), Expect = 6.1
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 402 QQDGP-HRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQDVLRVRQARPHLARV 566
QQ+ P + +L R A VCD L L +R HL + + H DVLR +A A++
Sbjct: 633 QQNNPDQQVDLVRD-ASVCDEKTLQLL-LRGHLKKCDQLHLDVLRALKASSDPAKL 686
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +1
Query: 325 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 435
C C+ T H +EC P D C C GH++ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 442
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +1
Query: 319 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHI--ARNCPEGGRESATQTCYNCNKSG 489
+ C C G+G A+ +P+ C C G + A P G + TC +CN +G
Sbjct: 222 ESCGTCEGSG------AKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQV-MTCSSCNGTG 274
Query: 490 HISRNC 507
IS C
Sbjct: 275 EISTPC 280
>At1g40080.1 68414.m04737 hypothetical protein member of
hypothetical protein common family
Length = 154
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Frame = +1
Query: 259 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSP--DEPSCYNCNKTGHIARNC 432
+KC N +A+ ++ Y TG+ C + D+P + N +
Sbjct: 71 QKCLGANNP--YAKFVEKNKGLAYEST-TGYYQMRCRWNVTHDKPVFIDMNNEKRCIMHP 127
Query: 433 PEGGRESATQTCYNCNKSGHISRNC 507
P +TC+ C K GH + C
Sbjct: 128 PFQPGRMVRRTCHRCKKVGHRCKKC 152
>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
contains similarity to CONSTANS homologs
Length = 373
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/54 (27%), Positives = 20/54 (37%)
Frame = +1
Query: 391 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGH 552
C +C++ H A + R S T C CN R + C C GH
Sbjct: 25 CLSCDRNVHSANALSK--RHSRTLVCERCNAQPASVRCSDERVSLCQNCDWSGH 76
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Frame = +1
Query: 334 CNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 435
C H +C P D CY+C GH++ CP
Sbjct: 339 CGYIDHPTEQCLHPPQAMPYMVDCAKCYSCGGVGHVSMYCP 379
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Frame = +1
Query: 241 GFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP-----SCYNCN 405
GF R+R C+ C C+ C+ + A +P +P +CY
Sbjct: 1549 GFTRKRHNCYNCGLV------------HCHACSSKKALKAALAPTPGKPHRVCDACYTKL 1596
Query: 406 KTGHIARNCPEGGRESATQT 465
K G N R S T T
Sbjct: 1597 KAGESGYNSNVANRNSTTPT 1616
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,229,226
Number of Sequences: 28952
Number of extensions: 271702
Number of successful extensions: 1583
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -