Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a13
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   3.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   3.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.5  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   4.5  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   6.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   7.9  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 71  ISNVSNLQNHHNDNASL 21
           ISN+SN  N++N N  L
Sbjct: 90  ISNISNYNNNNNYNKKL 106


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 71  ISNVSNLQNHHNDNASL 21
           ISN+SN  N++N N  L
Sbjct: 328 ISNISNYNNNNNYNKKL 344


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +3

Query: 213 GFGYKGSIFHRVIPN 257
           GFGY+ ++ ++V+P+
Sbjct: 389 GFGYESNVKYQVVPS 403


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +3

Query: 213 GFGYKGSIFHRVIPN 257
           GFGY+ ++ ++V+P+
Sbjct: 389 GFGYESNVKYQVVPS 403


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +3

Query: 213 GFGYKGSIFHRVIPN 257
           GFGY+ ++ ++V+P+
Sbjct: 15  GFGYESNVKYQVVPS 29


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 71  ISNVSNLQNHHNDNASL 21
           ISN+SN  N +N N  L
Sbjct: 90  ISNISNYNNDNNYNKKL 106


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 541 LEVFPDWLPKVSICLTTSMPSTTFPKTTCLPSSQ 440
           L V+P++   V +C   S   ++  KT C   +Q
Sbjct: 643 LNVYPEFQENVQLCSEISESYSSNNKTLCKCDAQ 676


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 353 LKGEILVFKLIAVDGLSPSAVMVGE 279
           L G +  FK++ ++ L+  +V +GE
Sbjct: 55  LAGGLKSFKILPIEPLAVDSVKIGE 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,898
Number of Sequences: 438
Number of extensions: 4373
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)