Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10a11
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 159 3e-40
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 50 4e-07
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 48 1e-06
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 47 2e-06
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 46 7e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 44 2e-05
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 44 2e-05
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 43 4e-05
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 43 5e-05
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 42 6e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 40 3e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 8e-04
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 39 8e-04
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 39 8e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 38 0.001
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 38 0.001
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 38 0.001
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 38 0.002
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 37 0.003
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 36 0.007
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 35 0.010
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 34 0.022
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.029
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 32 0.068
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 31 0.12
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 31 0.12
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 31 0.16
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 31 0.21
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 30 0.27
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 30 0.36
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 29 0.83
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 28 1.1
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 1.5
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 27 1.9
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 27 2.5
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 27 2.5
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.4
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 3.4
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 3.4
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 26 4.4
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 25 7.8
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 159 bits (386), Expect = 3e-40
Identities = 82/177 (46%), Positives = 108/177 (61%)
Frame = +2
Query: 152 MVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGK 331
M +R++VG +P D+ FFKG+G+I D + NG+GFVE ED RDA D V + GK
Sbjct: 1 MSETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGK 60
Query: 332 ELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSSRI 511
E +G R+VVEPARG R + +R P RT +RLIVENLS +
Sbjct: 61 EFMGSRIVVEPARGERRRRENFRESAASKYPR-----------PRRTGFRLIVENLSEDV 109
Query: 512 SWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVRL 682
SWQDLKD MR+AGE T+ DAH+++ GVVEF+T DMR A+ L+G + G+ V L
Sbjct: 110 SWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTL 166
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 49.6 bits (113), Expect = 4e-07
Identities = 47/189 (24%), Positives = 75/189 (39%), Gaps = 16/189 (8%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN-------GYGFVEFEDYRDADDAVYEL 322
RVYVG L + VR +L++F G + + I N G +E+ +A A+ L
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126
Query: 323 NGKELLGERVVV-----EPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLI 487
+ ++ +G V + + AR S + + Y
Sbjct: 127 SNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNVSSISNPLYSFP 186
Query: 488 VENLSSRISWQDLKDYMRQAGEVTYADAHK----QHRNEGVVEFATHSDMRAAIEKLDGT 655
L + WQDLKD RQAG V AD + R G+V ++ + AI+ L T
Sbjct: 187 RTLLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNT 246
Query: 656 ELNGRRVRL 682
+ GR + +
Sbjct: 247 DFMGRTLEV 255
Score = 41.9 bits (94), Expect = 8e-05
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +2
Query: 464 TRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYAD----AHKQHRNEGVVEFATHSDMRA 631
T+ E R+ V NLS ++ W +LK++M Q G V + + + ++E++T + R
Sbjct: 62 TQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEART 121
Query: 632 AIEKLDGTELNGRRV 676
AI+ L + GR V
Sbjct: 122 AIKTLSNQKFMGRLV 136
Score = 36.7 bits (81), Expect = 0.003
Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 11/178 (6%)
Frame = +2
Query: 182 LPFGVRERDLEKFFKGFGRI--RDILIKN-----GYGFVEFEDYRDADDAVYELNGKELL 340
LP+ VR +DL+ F+ G + DI + G G V ++A A+ L+ + +
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFM 249
Query: 341 GERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSSRISWQ 520
G + V +DR A H P + Y V NL S +
Sbjct: 250 GRTLEVR----LDRFA--------HHKIEDLVYHAYPHGPCSDCIY---VGNLPWATSDR 294
Query: 521 DLKDYMRQAGEVTYA----DAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVRL 682
+L D G V A + + + GVV+F +D ++IEKL+G GR ++L
Sbjct: 295 NLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQL 352
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYELN 325
+YVG LP+ +R+L F G + I G+G V+FE+ DA ++ +LN
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 326 G 328
G
Sbjct: 342 G 342
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 48.4 bits (110), Expect = 1e-06
Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 16/191 (8%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN------GYGFVEFEDYRDADDAVYE 319
G +YV + F V E+D+E FF+ +G++ + I G+G+V +DA++A+
Sbjct: 756 GRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENAL-S 814
Query: 320 LNGKELLGERVV----VEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLI 487
GK+L G RV+ +P ++++ R D + + I
Sbjct: 815 AAGKQL-GNRVLNVVLSKPRESLEKT--RVSSNDNRTLAKSFETTESNKMSTPKKSFEQI 871
Query: 488 ------VENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLD 649
V N+ ++ L+ G++ H +H VVEF D A L+
Sbjct: 872 KSKSLGVTNVDGTVNEARLRSLFESYGKLYRVVLHPEHEG-AVVEFLDIHDAGKASLALE 930
Query: 650 GTELNGRRVRL 682
G E+ GR + +
Sbjct: 931 GHEIGGRLLHI 941
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 47.2 bits (107), Expect = 2e-06
Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 12/184 (6%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 322
V+V L + R+L FF+ G +RD I G +VEF + D+ A L
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF-CHEDSVQAAIAL 300
Query: 323 NGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLS 502
+GK LLG V+V+ A++ R+ +RL V N+
Sbjct: 301 SGKRLLGLPVIVQLT-----EAEKNRKAREAAELARAASAEIPF-------HRLCVSNIH 348
Query: 503 SRISWQDLKDYMRQAGEVTYADAHKQHRNE----GVVEFATHSDMRAAIEKLDGTELNGR 670
++ +D+K G++ + + +N G +++ R A+EK++G +L GR
Sbjct: 349 FNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGR 408
Query: 671 RVRL 682
+R+
Sbjct: 409 NMRV 412
Score = 32.7 bits (71), Expect = 0.051
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN-------GYGFVEFEDYRDADDAVYEL 322
R+ V + F + + D++ F+ FG I + ++ G+G++++ + A +A+ ++
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 323 NGKELLGERVVV 358
NG +L G + V
Sbjct: 401 NGFDLAGRNMRV 412
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 45.6 bits (103), Expect = 7e-06
Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGR-IR-DILI-----KNGYGFVEFEDYRDADDAVYELN 325
+YV G G+R R+L F+ FG IR DI I + FVE+ED RDA+DA YE++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 326 GKELL--GERVVVEPARGIDRSADRYRRGDR 412
G+ L G + VE A+ S +RG R
Sbjct: 69 GRRLERGGGVLRVEWAKQPPPSGPGSKRGGR 99
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 44.0 bits (99), Expect = 2e-05
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 11/187 (5%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK-------NGYGFVEFEDYRDADD 307
KM V++ L + + L F FG+I + GYGFV F+ A+
Sbjct: 164 KMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANA 223
Query: 308 AVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLI 487
A+ +NG L ++V V R +R +
Sbjct: 224 AIEHVNGMLLNDKKVYV---------GHHVSRRERQSKVEALKANFT----------NVY 264
Query: 488 VENLSSRISWQDLKDYMRQAGEVT----YADAHKQHRNEGVVEFATHSDMRAAIEKLDGT 655
++NL + I+ Q+ D Q GE+T D + + R G V +A H + A+++L+
Sbjct: 265 IKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDK 324
Query: 656 ELNGRRV 676
E G+++
Sbjct: 325 EYKGKKL 331
Score = 41.1 bits (92), Expect = 1e-04
Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 11/181 (6%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN------GYGFVEFEDYRDADDAVYE 319
+ VY+ L + E++ F FG I + L+K+ G+GFV + ++ A AV E
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 499
LN KE G+++ V A+ ++ +R L ++NL
Sbjct: 321 LNDKEYKGKKLYVGRAQ---------KKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNL 371
Query: 500 SSRISWQDLKDYMRQAGEVTYA----DAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNG 667
+ + LK G +T A D + + G V + T + A+ +++ L G
Sbjct: 372 QDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAG 431
Query: 668 R 670
+
Sbjct: 432 K 432
Score = 30.3 bits (65), Expect = 0.27
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADD 307
K G +++ L V + L+ F FG I I G+GFV + +A+
Sbjct: 360 KYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANK 419
Query: 308 AVYELNGKELLGERVVVEPAR 370
AV E+N + L G+ + V A+
Sbjct: 420 AVTEMNQRMLAGKPLYVALAQ 440
Score = 29.1 bits (62), Expect = 0.63
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI------RDILIKN--GYGFVEFEDYRDADDAVYEL 322
+YVG L V E L + F G + RD + + GY +V F + D + A+ EL
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 323 N 325
N
Sbjct: 142 N 142
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDI------------LIKNGYGFVEFEDYRDADD 307
RV+VG L ++ ++ F+ G +R + L+ +G FV F + D D
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 308 AVYELNGKELLGERVVVEPARGIDRSADRYRRGDRH 415
A+ LNGK L +VV+ AR + + R+ ++
Sbjct: 105 AIETLNGKTLDDREIVVQKARPVQEQPIKDRKKSKN 140
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPA 367
G+GFV F + D A+ E+NGK++ +VV+ A
Sbjct: 259 GFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 43.2 bits (97), Expect = 4e-05
Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 15/164 (9%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNG---------YGFVEFEDYRDADD 307
+YVG LP + DL + F+ FG + KN + F+ FE+ AD+
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 308 AVYELNGKELLGERVVVEPARGIDRSADRYRRG-DR-HXXXXXXXXXXXXXXPPTRTEYR 481
A+ LNG G + VE ++R ++ G D+ H E R
Sbjct: 82 AIASLNGSSFQGNTLKVEYTHIVERYKNKLENGVDQIHHSNNEKAKIRFSKIEKYTKETR 141
Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFAT 613
V + R+S +D K+Y + ++ K H E AT
Sbjct: 142 PTVSEV--RVSTKDKKEYSMNTSNLVQSNPPKVHDKENAFAEAT 183
Score = 31.9 bits (69), Expect = 0.089
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +2
Query: 203 RDLEKFFKGFGRIRDIL--------IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVV 358
+ LE+ F FGRI+ I GYGFV F +A A+ LNG +R+ V
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 359 EPARGIDRSADRYRR 403
A ++ DR +R
Sbjct: 495 NYA---EKREDRKKR 506
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 42.7 bits (96), Expect = 5e-05
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +2
Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNG 328
+ + V+VGGL + E+DL+ F+ FGRI +I I G GFV++ + A+ A+ + G
Sbjct: 295 LNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQG 354
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 42.3 bits (95), Expect = 6e-05
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNGKE 334
S V+VGGL V E +L+ F+ FG I + I G GFV+F + + A+ A+ +L G
Sbjct: 303 STVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYP 362
Query: 335 LLGERV 352
L R+
Sbjct: 363 LGNSRI 368
Score = 39.1 bits (87), Expect = 6e-04
Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 4/147 (2%)
Frame = +2
Query: 254 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXX 433
+ GYGFV F D D A+ E+ G ++ G+R + A + +
Sbjct: 226 VSRGYGFVRFTDENDQKSALAEMQG-QICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPP 284
Query: 434 XXXXXXXXPPTR----TEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVV 601
P + + V LS +S ++LK + GE+ Y + G V
Sbjct: 285 VGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKI-PPGKGCGFV 343
Query: 602 EFATHSDMRAAIEKLDGTELNGRRVRL 682
+F AI +L G L R+RL
Sbjct: 344 QFVNRQSAEIAINQLQGYPLGNSRIRL 370
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 39.9 bits (89), Expect = 3e-04
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV 313
G+ V+VG +P+ V E+ + + F G ++ + GYGF EF D AV
Sbjct: 6 GNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAV 65
Query: 314 YELNGKELLGERVVVEPARGIDRSADRYRRGDR 412
+LN EL ++ VE R Y +R
Sbjct: 66 RKLNNSELGPRKIRVEFPSNDPRRNQSYEYTER 98
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 38.7 bits (86), Expect = 8e-04
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVY 316
S ++V L F ++ DL FF G I+ ++ GYGFV F DA A
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 317 ELNGKELLG 343
EL K+L G
Sbjct: 65 ELKNKKLHG 73
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVV 355
G+GF++F ++ A A+ LNG+E+ ++++
Sbjct: 540 GFGFMQFISHKYALMALRWLNGREITVKKII 570
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 38.7 bits (86), Expect = 8e-04
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE 346
VYV LP + ++L +F FG I + N G + F A+ A+ E+N L G
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQVNNNSGRIVFAQRYFAEQAINEMNNFPLHGV 237
Query: 347 RVVVEPAR 370
R+ + AR
Sbjct: 238 RIQLSWAR 245
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 38.7 bits (86), Expect = 8e-04
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 161 SRVYVGGLPF-GVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL 337
SR+++G L + +R+L K FK +G + I++K YGFV+F D A+ G +
Sbjct: 363 SRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFV 422
Query: 338 LGERVVVE 361
G+++ +E
Sbjct: 423 RGQKLHLE 430
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 38.3 bits (85), Expect = 0.001
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYEL 322
+++ L + +E D+E+ F +G I I +++N GY FV FE RD A
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 323 NGKELLGERVVVEPARG 373
G L G R+VV+ RG
Sbjct: 162 AGLMLNGRRIVVDVERG 178
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIR--DILIKNGYGFVEFEDYRDADDAVYELN 325
V++G LP E+++E+ F FG+I IL K FV F + RDA V L+
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLS 355
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 37.9 bits (84), Expect = 0.001
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Frame = +2
Query: 152 MVGSRVYVGGLPFGVRERDLEKFFKGFGRI-------RDILIKN-GYGFVEFEDYRDADD 307
++G+ ++VG L V ER L F G++ RD ++ GYGFV ++ + AD
Sbjct: 96 LIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADA 155
Query: 308 AVYELNGKELLGERVVVEPARGIDRSADRYRRGD 409
A+ +N + L+ + + V A R R GD
Sbjct: 156 AIEAMNNQFLMNKPITVSYA--FKREGKGERHGD 187
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 319
++Y+ LP + E + + K FG + LIKN G+ F EF++ DA+ A+
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 320 LNGKELLGERV 352
L+GK+ G ++
Sbjct: 371 LDGKDTYGNKL 381
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 36.7 bits (81), Expect = 0.003
Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 18/190 (9%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGF-GRIRDIL------------IKNGYGFVEFEDYRDADD 307
+YV L F ++ + +K FK G + ++ + G+GFVEF+D A
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 308 AVYELNGKELLGERVVVEPA-RGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRL 484
A++ +NG L G ++ ++ + +G+D +A+ R+ D P T ++
Sbjct: 681 AMHAMNGFVLDGHKLEIKLSHQGVDAAAE-VRKQD--------------SSKPKGT--KI 723
Query: 485 IVENLSSRISWQDLKDYMRQAGEVTYADAHKQH----RNEGVVEFATHSDMRAAIEKLDG 652
+++NL + +D++ + G++ K+ R EF T + A+ L
Sbjct: 724 LIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALKN 783
Query: 653 TELNGRRVRL 682
T L GR + L
Sbjct: 784 THLLGRHLVL 793
Score = 35.5 bits (78), Expect = 0.007
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--------NGYGFVEFEDYRDADDAVYE 319
R+++ L + E DL+ F FG++ + + G+ +++F D DA A E
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 320 LNGKELLGERVVVEPAR 370
L+ K G + V PA+
Sbjct: 384 LDAKPFQGRLLHVLPAK 400
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 35.5 bits (78), Expect = 0.007
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVY 316
++++VGG+P E + FF FGR+ D + G+GFV +E+ + +
Sbjct: 247 AKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMS 306
Query: 317 E----LNGKELLGERVVVEPARGIDRSADRYRRG 406
+ ++GK + +R P + S DR++ G
Sbjct: 307 QPYITIHGKPVEVKRAT--PKASLRDSHDRHQHG 338
Score = 31.9 bits (69), Expect = 0.089
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
++++GGL + + L +F+ FG + D + G+GF+ F++ + V E
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPK----CVNE 219
Query: 320 LNGKELLGERVVVEPARGIDR 382
+ KE + +++P R I R
Sbjct: 220 VMSKEHHLDGKIIDPKRAIPR 240
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 35.1 bits (77), Expect = 0.010
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 322
VYVG +P+ + E + FK G ++ + GYGF E+ D A AV L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 323 NGKELLGERVVVEPARGIDRSADRYRRGDR 412
N + R+ V+ +AD+ RR D+
Sbjct: 67 NNYDAGTRRLRVD-----FPTADQIRRLDK 91
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 33.9 bits (74), Expect = 0.022
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYEL 322
+Y+G L F + E D+ F FG DI L+++ G+ F+++ED R AV +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 323 NGKELLGERVVVE 361
+LL V V+
Sbjct: 93 TNVKLLDRLVRVD 105
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 33.5 bits (73), Expect = 0.029
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI-------RDILIKNGYGFVEFEDYRDADDAVYELN 325
V+VG L V E L F FG I ++ + Y FVEF++ DA +A+ +N
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 326 GKELLGERVVVEPA 367
L + V PA
Sbjct: 68 YSILCDRCIRVSPA 81
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 32.3 bits (70), Expect = 0.068
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN 262
R+YVGGL + DLE F FG + ++ I N
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIIN 38
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 31.5 bits (68), Expect = 0.12
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Frame = +2
Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGV------VEFATHSDMRAAIEK 643
++V+N+ + L D+ +Q G + A H + G+ F + + ++
Sbjct: 204 IVVKNIPFSLEKDTLLDHFKQLG-IPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQT 262
Query: 644 LDGTELNGRRVRL 682
L+G E+NGRR+R+
Sbjct: 263 LNGYEINGRRLRV 275
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 31.5 bits (68), Expect = 0.12
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 221 FKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPAR 370
F GF +R + + G FVE++ R+A A G L G ++ V AR
Sbjct: 197 FSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTGMSLSGNQIKVTFAR 246
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 31.1 bits (67), Expect = 0.16
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Frame = +2
Query: 482 LIVENLSSRISWQDL----KDYMRQAGEVTYADAHKQ--HRNEGVVEFATHSDMRAAIEK 643
L V +L+S S ++L KDY +Q G + + K R V+F D A+ +
Sbjct: 81 LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASKALSE 140
Query: 644 LDGTELNGRRVRL 682
T L+GR +R+
Sbjct: 141 AQNTILDGRHIRI 153
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 254 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPAR 370
++ Y FV+F++ DA A+ E L G + +E A+
Sbjct: 119 LQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRIERAK 157
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.7 bits (66), Expect = 0.21
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGY--GFVE 280
K+ +++GG+ VRE L F+ FG ++ +++ + Y GF++
Sbjct: 402 KVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLK 447
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 30.3 bits (65), Expect = 0.27
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYADAH-KQHRNEGVVEFATHSDMRAAIEKLDGTE 658
+++ENL+ S D+ + GE+ + Q + V F+T + + ++KLDG
Sbjct: 102 VVIENLAPGTSSDDVAATLLNFGEILNCQVNDSQGKVRASVRFSTLASAQQVVQKLDGVT 161
Query: 659 LNG 667
+G
Sbjct: 162 ADG 164
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 29.9 bits (64), Expect = 0.36
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNG----YGFVEFEDYRDADDAVYEL 322
+YVG LP G E+ + +F FG + + + K G Y F+EFE D + V E
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESL-DVANVVAET 165
Query: 323 NGKELL 340
LL
Sbjct: 166 MHNYLL 171
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 28.7 bits (61), Expect = 0.83
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = +2
Query: 254 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSADRYRR 403
I GYGFV F A A LNG + +R+ V A +R +DR RR
Sbjct: 423 ISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFA---ERKSDRIRR 469
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN------GYGFVEFEDYRDADDAVYEL 322
+ +Y+ LP E D+ FK I + ++++ G GF +D + A+D + +
Sbjct: 384 TNLYISNLPLHWNESDISTLFKPSKIISNRVLRDSKEQSRGVGFARMQDRKTAEDIINKF 443
Query: 323 N 325
N
Sbjct: 444 N 444
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 322
V+VG L + V ++ L + F+ +G I + GYG+V+FE A AV
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 323 NGKELLGERV 352
KE+ G V
Sbjct: 325 GTKEIDGRMV 334
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 676 HAPSVQFRTVQFLNGGPHVRVRRKFYHTFIPVLFM 572
HA + F ++ +G R R FY +IP LFM
Sbjct: 305 HADVMDFLELRKTHGNEDFRAREMFYALWIPDLFM 339
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVV 358
G F +FE+ AD V EL+GK++L V
Sbjct: 92 GLVFADFENVDGADLCVQELDGKQILKNHTFV 123
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 313 HSIICISVIFKFNKTISILDKYVSDSS 233
H+II I +F++ K + KYV+D++
Sbjct: 159 HAIISIGYMFRYLKIVQAAKKYVADNN 185
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = -2
Query: 679 SHAPSVQFRTVQFLNGGPHVRVRRKFYHTFIPVLFMGVSVSHFASLTHIVFQILPANA 506
+H + + V + GP +R+RR++ I V + + + F +T +LP +A
Sbjct: 139 AHGMNKAYGWVIYKKIGPELRMRRRYLVYKIYVTLLKIDIYFFLGVTVQYVMVLPEDA 196
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI--LIKNGYGFVEFEDYRDA 301
+YV LP G + F +G ++DI L + V +E A
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNSAIVSYESLSSA 48
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.6 bits (56), Expect = 3.4
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Frame = +2
Query: 137 IVYWKMVGSRVYVGGLPFGVRERDLEKFFKGFGR------IRDILIKN-GYGFVEFEDYR 295
++ W R++VG L V + L + F + +RD K G+GFV F+D
Sbjct: 22 LLEWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSD 81
Query: 296 DADDAVYELNGKELLGERVV 355
A E NGK +G R V
Sbjct: 82 QFLKAWREKNGK-YIGSRPV 100
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +2
Query: 197 RERDLEKFFKGFGRIRDILI----KNG----YGFVEFEDYRDADDAVYELNGKELLGERV 352
++ DLE F FG+I + + G Y F+EF++ + A +++ + R+
Sbjct: 256 QDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRI 315
Query: 353 VVEPARGIDRSADRY 397
V+ ++ + R Y
Sbjct: 316 HVDFSQSVARYRQYY 330
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 152 MVGSRVYVGGLPFGVRERDLEKFFKGFGRI 241
++ VY+ GLP V ++E+ FK G I
Sbjct: 107 VINKAVYIQGLPLDVTVDEIEEVFKKCGVI 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,412
Number of Sequences: 5004
Number of extensions: 48321
Number of successful extensions: 225
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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