Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10a11
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 118 4e-27
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 118 4e-27
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 118 4e-27
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 116 1e-26
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 113 8e-26
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 113 8e-26
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 107 7e-24
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 85 5e-17
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 79 2e-15
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 63 1e-10
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 62 4e-10
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 61 6e-10
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 60 1e-09
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 59 2e-09
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 59 3e-09
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 57 1e-08
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 57 1e-08
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 55 4e-08
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 55 4e-08
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 55 4e-08
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 54 7e-08
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 54 7e-08
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 54 7e-08
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 54 7e-08
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 54 1e-07
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 53 2e-07
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 53 2e-07
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 53 2e-07
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 50 1e-06
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 50 1e-06
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 50 1e-06
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 48 4e-06
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 48 4e-06
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 48 6e-06
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 48 6e-06
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 48 6e-06
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 48 8e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 48 8e-06
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 48 8e-06
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 47 1e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 46 2e-05
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 46 2e-05
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 46 2e-05
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 46 3e-05
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 46 3e-05
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 45 4e-05
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 45 4e-05
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 45 4e-05
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 45 4e-05
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 45 5e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 45 5e-05
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 45 5e-05
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 45 5e-05
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 44 7e-05
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 44 7e-05
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 44 7e-05
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 44 9e-05
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 44 9e-05
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 44 9e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 44 9e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 44 9e-05
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 44 9e-05
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 44 9e-05
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 44 1e-04
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 43 2e-04
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 43 2e-04
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 43 2e-04
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 43 2e-04
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 43 2e-04
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 42 3e-04
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 42 3e-04
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 42 3e-04
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 42 3e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 42 3e-04
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 42 3e-04
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 42 5e-04
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 42 5e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 42 5e-04
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 42 5e-04
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 42 5e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 42 5e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 41 7e-04
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 41 7e-04
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 41 7e-04
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 41 7e-04
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 41 9e-04
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 41 9e-04
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 40 0.001
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 40 0.001
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 40 0.001
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 40 0.001
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 40 0.001
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 40 0.001
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 40 0.002
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 40 0.002
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 40 0.002
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 40 0.002
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 40 0.002
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 40 0.002
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 40 0.002
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 40 0.002
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 39 0.003
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 39 0.003
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 39 0.003
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 39 0.003
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 39 0.004
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 39 0.004
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 39 0.004
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 38 0.005
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 38 0.005
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 38 0.006
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 38 0.008
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 37 0.011
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 37 0.011
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 37 0.014
At5g51300.2 68418.m06360 splicing factor-related contains simila... 37 0.014
At5g51300.1 68418.m06359 splicing factor-related contains simila... 37 0.014
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 37 0.014
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 37 0.014
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 37 0.014
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 37 0.014
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 37 0.014
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 37 0.014
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 36 0.019
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 36 0.019
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 36 0.025
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 36 0.025
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 36 0.025
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 36 0.033
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 36 0.033
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 36 0.033
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 36 0.033
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 36 0.033
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 36 0.033
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 36 0.033
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 36 0.033
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 36 0.033
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 35 0.058
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 35 0.058
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 35 0.058
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 35 0.058
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 35 0.058
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 35 0.058
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 35 0.058
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 35 0.058
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 34 0.077
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 34 0.077
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 34 0.077
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 34 0.10
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 34 0.10
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 34 0.10
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 34 0.10
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 33 0.13
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ... 33 0.13
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 33 0.18
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 33 0.18
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 33 0.18
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 33 0.18
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 33 0.18
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 33 0.18
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 33 0.23
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 33 0.23
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 33 0.23
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 33 0.23
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 33 0.23
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 32 0.41
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 32 0.41
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 32 0.41
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 31 0.54
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 31 0.54
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 31 0.54
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 31 0.54
At1g47370.1 68414.m05244 Toll-Interleukin-Resistance (TIR) domai... 31 0.72
At1g05510.1 68414.m00563 expressed protein 31 0.72
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 31 0.95
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 31 0.95
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 31 0.95
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 31 0.95
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 31 0.95
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 31 0.95
At2g31985.1 68415.m03909 expressed protein 30 1.3
At1g79975.2 68414.m09353 expressed protein 30 1.3
At1g79975.1 68414.m09352 expressed protein 30 1.3
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 30 1.7
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 30 1.7
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 30 1.7
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 30 1.7
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 30 1.7
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s... 30 1.7
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 30 1.7
At5g45520.1 68418.m05591 hypothetical protein 29 2.2
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 29 2.2
At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing ... 29 2.2
At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein... 29 2.2
At5g03480.1 68418.m00304 expressed protein ; expression support... 29 2.9
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 2.9
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 29 2.9
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 29 2.9
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 29 3.8
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 29 3.8
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 29 3.8
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 29 3.8
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 28 5.0
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 28 6.7
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa... 27 8.8
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa... 27 8.8
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa... 27 8.8
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa... 27 8.8
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 27 8.8
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 118 bits (284), Expect = 4e-27
Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 8/172 (4%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 331
VYVG LP +RER++E F +G + I +K GY FVEF+D RDA+DA++ +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 332 ELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXX--PPTRTEYRLIVENLSS 505
+ G R+ VE A G RS+D R P R+E+R++V L S
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPS 128
Query: 506 RISWQDLKDYMRQAGEVTYADAHKQHR-NEGVVEFATHSDMRAAIEKLDGTE 658
SWQDLKD+MR+ G+V ++ ++ R GVV++ + DM+ A++KLD TE
Sbjct: 129 SASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTE 180
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 118 bits (284), Expect = 4e-27
Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 8/172 (4%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 331
VYVG LP +RER++E F +G + I +K GY FVEF+D RDA+DA++ +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 332 ELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXX--PPTRTEYRLIVENLSS 505
+ G R+ VE A G RS+D R P R+E+R++V L S
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPS 128
Query: 506 RISWQDLKDYMRQAGEVTYADAHKQHR-NEGVVEFATHSDMRAAIEKLDGTE 658
SWQDLKD+MR+ G+V ++ ++ R GVV++ + DM+ A++KLD TE
Sbjct: 129 SASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTE 180
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 118 bits (284), Expect = 4e-27
Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 8/172 (4%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 331
VYVG LP +RER++E F +G + I +K GY FVEF+D RDA+DA++ +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 332 ELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXX--PPTRTEYRLIVENLSS 505
+ G R+ VE A G RS+D R P R+E+R++V L S
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPS 128
Query: 506 RISWQDLKDYMRQAGEVTYADAHKQHR-NEGVVEFATHSDMRAAIEKLDGTE 658
SWQDLKD+MR+ G+V ++ ++ R GVV++ + DM+ A++KLD TE
Sbjct: 129 SASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTE 180
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 116 bits (279), Expect = 1e-26
Identities = 66/168 (39%), Positives = 93/168 (55%), Gaps = 9/168 (5%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 331
+YVG LP +RER++E F +G + I +K GY FVEFED RDADDA+Y +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 332 ELLGERVVVEPARGIDRSADRYR---RGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLS 502
+ G + VE A G RS+ R G P R+EYR++V L
Sbjct: 69 DFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEYRVVVSGLP 128
Query: 503 SRISWQDLKDYMRQAGEVTYADAHKQHR-NEGVVEFATHSDMRAAIEK 643
S SWQDLKD+MR+ GEV ++ + R G+V++ ++ DM+ AI+K
Sbjct: 129 SSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYAIKK 176
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 113 bits (273), Expect = 8e-26
Identities = 64/167 (38%), Positives = 92/167 (55%), Gaps = 9/167 (5%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 331
+YVG LP +RER++E F +G + I +K GY FVEFED RDADDA+Y +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 332 ELLGERVVVEPARGIDRSADRYR---RGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLS 502
+ G + VE A G RS+ R G P R+EYR++V L
Sbjct: 69 DFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEYRVVVSGLP 128
Query: 503 SRISWQDLKDYMRQAGEVTYADAHKQHR-NEGVVEFATHSDMRAAIE 640
S SWQDLKD+MR+ GEV ++ + R G+V++ ++ DM+ A++
Sbjct: 129 SSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYALD 175
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 113 bits (273), Expect = 8e-26
Identities = 70/173 (40%), Positives = 97/173 (56%), Gaps = 9/173 (5%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 331
+YVG LP +R+ ++E F +G I DI +K GY FVEFED RDADDA+Y +G
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 332 ELLGERVVVEPARGIDR---SADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLS 502
+ G R+ VE A G R S DRY P R++YR++V L
Sbjct: 69 DFDGCRLRVEIAHGGRRFSPSVDRYSSS-----------YSASRAPSRRSDYRVLVTGLP 117
Query: 503 SRISWQDLKDYMRQAGEVTYADAHKQHRN-EGVVEFATHSDMRAAIEKLDGTE 658
SWQDLKD+MR+AG+V +++ + GVV+++ + DM+ AI KLD TE
Sbjct: 118 PSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATE 170
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 107 bits (257), Expect = 7e-24
Identities = 70/175 (40%), Positives = 94/175 (53%), Gaps = 11/175 (6%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNG-----YGFVEFEDYRDADDAVYELNGK 331
+YVG LP +RE ++E F +GRI DI +K Y FVEFE RDA+DA+ +G
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 332 ELLGERVVVEPARGI--DRSADR---YRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVEN 496
L G R+ VE A G S+DR Y G +E+R+IV
Sbjct: 69 NLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHSEFRVIVRG 128
Query: 497 LSSRISWQDLKDYMRQAGEVTYADAHKQHRNE-GVVEFATHSDMRAAIEKLDGTE 658
L S SWQDLKD+MR+AG+V +A+ + GVV++ + DM+ AI KLD TE
Sbjct: 129 LPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLDDTE 183
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 84.6 bits (200), Expect = 5e-17
Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELL 340
+R+YVG L R RDLE+ F +GR+RD+ +K Y FVEF D RDADDA Y L+G++
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFD 70
Query: 341 GERVVVEPARGIDR-SADRYRRG 406
G R+ VE +RG R S D RG
Sbjct: 71 GSRITVEASRGAPRGSRDNGSRG 93
Score = 32.3 bits (70), Expect = 0.31
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = +2
Query: 479 RLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTE 658
RL V LSSR +DL+ + G V D R+ VEF+ D A LDG +
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVD---MKRDYAFVEFSDPRDADDARYYLDGRD 68
Query: 659 LNGRRV 676
+G R+
Sbjct: 69 FDGSRI 74
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 79.4 bits (187), Expect = 2e-15
Identities = 41/83 (49%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELL 340
+R+YVG L R RDLE+ F +GR+RD+ +K Y FVEF D RDADDA + L+G++
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFD 70
Query: 341 GERVVVEPARGIDR-SADRYRRG 406
G R+ VE +RG R S D RG
Sbjct: 71 GSRITVEFSRGAPRGSRDFDSRG 93
Score = 32.7 bits (71), Expect = 0.23
Identities = 23/66 (34%), Positives = 30/66 (45%)
Frame = +2
Query: 479 RLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTE 658
RL V LSSR +DL+ + G V D R+ VEF D A LDG +
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVD---MKRDYAFVEFGDPRDADDARHYLDGRD 68
Query: 659 LNGRRV 676
+G R+
Sbjct: 69 FDGSRI 74
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 63.3 bits (147), Expect = 1e-10
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 2/167 (1%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL-LG 343
VYVG + R DLE+ F FGR++ + +K+GY FV FED RDA+DA+ + G
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTFGYG 63
Query: 344 ER-VVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSSRISWQ 520
R + VE A+ + R G PT+T + + + + +R +
Sbjct: 64 RRKLSVEWAKDFQGERGKPRDG-----------KAVSNQRPTKTLFVINFDPIRTR--ER 110
Query: 521 DLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTEL 661
D++ + G+V + RN V+FAT D A++ ++L
Sbjct: 111 DMERHFEPYGKVLNV---RMRRNFAFVQFATQEDATKALDSTHNSKL 154
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +2
Query: 185 PFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 364
P RERD+E+ F+ +G++ ++ ++ + FV+F DA A+ + +LL + V VE
Sbjct: 104 PIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEY 163
Query: 365 A-RGIDRSADRY 397
A R DRY
Sbjct: 164 ALREAGEREDRY 175
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 61.7 bits (143), Expect = 4e-10
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 2/172 (1%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE 346
V+VG + R+ DLE+ F +GR+ + +K+GY FV FED RDA+DA+ +L+ E
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYE 63
Query: 347 --RVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSSRISWQ 520
R+ VE A+G +R RGD PT+T + + + + R
Sbjct: 64 KRRLSVEWAKG-ERGRP---RGD---------AKAPSNLKPTKTLFVINFDPI--RTKEH 108
Query: 521 DLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRV 676
D++ + G+VT + RN V+F T D A+E +++ R V
Sbjct: 109 DIEKHFEPYGKVTNV---RIRRNFSFVQFETQEDATKALEATQRSKILDRVV 157
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/76 (32%), Positives = 39/76 (51%)
Frame = +2
Query: 185 PFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 364
P +E D+EK F+ +G++ ++ I+ + FV+FE DA A+ ++L V VE
Sbjct: 102 PIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEY 161
Query: 365 ARGIDRSADRYRRGDR 412
A D D R G R
Sbjct: 162 ALKDDDERDD-RNGGR 176
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 61.3 bits (142), Expect = 6e-10
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN---GYGFVEFEDYRDADDAVYELNGK 331
SRVYVG L V ER+LE F+ FG IR + + GY F++FED RDA DA+ E++GK
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGK 61
Query: 332 ELLGERVVVEPARG 373
G RV RG
Sbjct: 62 N--GWRVEQSHNRG 73
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 60.1 bits (139), Expect = 1e-09
Identities = 40/87 (45%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN---GYGFVEFEDYRDADDAVYELNGK 331
SRVYVG L V ER+LE F+ FG +R + + GY F++FED RDA DA+ L+GK
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGK 61
Query: 332 ELLGERVVVEPARGIDRSADRYRRGDR 412
G RV RG +R R GDR
Sbjct: 62 N--GWRVEQSHNRG-ERGGGG-RGGDR 84
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 59.3 bits (137), Expect = 2e-09
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 12/97 (12%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV 313
GSR++VGGL V +RDLE+ F FG I D I G+GF+ F D R D+++
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65
Query: 314 YELNGKELLGERVV----VEPARGIDRSADRYRRGDR 412
E++G++ G+RV+ EP G D RG R
Sbjct: 66 REMHGRD-FGDRVISVNRAEPKLGRDDGESHGSRGGR 101
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 58.8 bits (136), Expect = 3e-09
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 13/186 (6%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
+++VG LPF V L + F+ G + + + G+GFV + + A +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 499
NG EL G + V + D + RG R + R+ V NL
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 500 SSRISWQDLKDYMRQAGEVT-----YADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELN 664
S + L+ + G+V Y + + G V + + +++ AI+ LDG +L+
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD 271
Query: 665 GRRVRL 682
GR++R+
Sbjct: 272 GRQIRV 277
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAV 313
G+RVYVG L +GV + LE F G++ RD G+GFV ++ ++ +A+
Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262
Query: 314 YELNGKELLGERVVVEPA 367
L+G +L G ++ V A
Sbjct: 263 KSLDGADLDGRQIRVSEA 280
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 56.8 bits (131), Expect = 1e-08
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 12/94 (12%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVY 316
SR++VGGL + V ER LE F +G+I RD G+GF+ F D R ADDA+
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 317 ELNGKELLGERVV----VEPARGIDRSADRYRRG 406
++G+E LG +V+ EP G D+ ++G
Sbjct: 72 HMHGRE-LGNKVISVNKAEPKVG-GEDVDQLKKG 103
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 56.8 bits (131), Expect = 1e-08
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 12/94 (12%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVY 316
SR++VGGL + V ER LE F +G+I RD G+GF+ F D R ADDA+
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 317 ELNGKELLGERVV----VEPARGIDRSADRYRRG 406
++G+E LG +V+ EP G D+ ++G
Sbjct: 72 HMHGRE-LGNKVISVNKAEPKVG-GEDVDQLKKG 103
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 55.2 bits (127), Expect = 4e-08
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 16/186 (8%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI-RDILIKN------GYGFVEFEDYRDADDAVYELN 325
++V LP+ + ++ FFK G + R LI N G GFVEF +A++A+ + N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 326 GKELLGERVVVEPA-RGIDRSADRY----RRGDRHXXXXXXXXXXXXXXPPTRTEYRLIV 490
G+ L ++ ++ A + +Y + D+ PP E L V
Sbjct: 189 GECLDNNKIFLDVANKKATYLPPKYCIDHKVWDKDYRRLESHPIEEDERPPNSVEEVLFV 248
Query: 491 ENLSSRISWQDLKDYMRQAGEVT----YADAHKQHRNEGVVEFATHSDMRAAIEKLDGTE 658
NLS + D+ D+ GEV + +H G VEFA+ + + A+E +G
Sbjct: 249 ANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKNGEY 308
Query: 659 LNGRRV 676
L+ ++
Sbjct: 309 LHDHKI 314
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +2
Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNE----GVVEFATHSDMRAAIEKLD 649
L V NLS R + + + EV HR E G VEFA+ ++ + A++K++
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550
Query: 650 GTELNGRRVRL 682
G L R + L
Sbjct: 551 GENLRSREIFL 561
Score = 31.5 bits (68), Expect = 0.54
Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 17/189 (8%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN------GYGFVEFEDYRDADDAVYELN 325
++V L + D+ FF G + I L+ N GYGFVEF + A+ N
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKN 305
Query: 326 GKELLGERVVVEPARGI----DRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVE 493
G+ L ++ ++ A+ + + Y R + R + L V
Sbjct: 306 GEYLHDHKIFIDVAKTAPYPPGPNYEDYLRRESLPIDEDETPPEFVEAVGVRKK-TLFVA 364
Query: 494 NLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGV----VEF--ATHSDMRAAIEKLDGT 655
+LS + + ++ + GEV + H + V VEF A + M A+E +G
Sbjct: 365 HLSRKTEITHIINFFKDVGEVVHVRLILNHTGKHVGCAFVEFGSANEAKMVRALETKNGE 424
Query: 656 ELNGRRVRL 682
LN ++ L
Sbjct: 425 YLNDCKIFL 433
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI-RDILIKN------GYGFVEFEDYRDADDAVYELN 325
++V L + + KFFK + R LI N G GFVEF +A A+ ++N
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550
Query: 326 GKELLGERVVVE 361
G+ L + ++
Sbjct: 551 GENLRSREIFLD 562
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 55.2 bits (127), Expect = 4e-08
Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN---GYGFVEFEDYRDADDAVYELNGK 331
+RVYVG L V ER+LE FK FG +R++ + GY F+EF+D RDA DA+ L+ K
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK 61
Query: 332 ELLGERVVVEPARGIDRSADRYRRG 406
G RV + R RRG
Sbjct: 62 N--GWRVELSHKDKGGRGGGGGRRG 84
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 55.2 bits (127), Expect = 4e-08
Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN---GYGFVEFEDYRDADDAVYELNGK 331
+RVYVG L V ER+LE FK FG +R++ + GY F+EF+D RDA DA+ L+ K
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK 61
Query: 332 ELLGERVVVEPARGIDRSADRYRRG 406
G RV + R RRG
Sbjct: 62 N--GWRVELSHKDKGGRGGGGGRRG 84
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 54.4 bits (125), Expect = 7e-08
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNG-------YGFVEFEDYRDADDAVY 316
G+ VYVGGLP+ + E + + F +G + + I N YGFV F + R ADDA+
Sbjct: 6 GNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIE 65
Query: 317 ELNGKELLGERVVV 358
+++GK + G V V
Sbjct: 66 DMDGKSIGGRAVRV 79
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 54.4 bits (125), Expect = 7e-08
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 319
R +VGGL + + DL++ F FG + D I N G+GFV F+D + DA+ E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 320 LNGKELLGERVVVEPAR 370
+NGKEL G + V A+
Sbjct: 67 MNGKELDGRVITVNEAQ 83
Score = 34.7 bits (76), Expect = 0.058
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +2
Query: 464 TRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYA----DAHK-QHRNEGVVEFATHSDMR 628
+ EYR V L+ + +DL+ Q G+V + D + R G V F MR
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 629 AAIEKLDGTELNGR 670
AIE+++G EL+GR
Sbjct: 62 DAIEEMNGKELDGR 75
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 54.4 bits (125), Expect = 7e-08
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 319
R +VGGL + + DL++ F FG + D I N G+GFV F+D + DA+ E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 320 LNGKELLGERVVVEPAR 370
+NGKEL G + V A+
Sbjct: 67 MNGKELDGRVITVNEAQ 83
Score = 34.7 bits (76), Expect = 0.058
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +2
Query: 464 TRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYA----DAHK-QHRNEGVVEFATHSDMR 628
+ EYR V L+ + +DL+ Q G+V + D + R G V F MR
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 629 AAIEKLDGTELNGR 670
AIE+++G EL+GR
Sbjct: 62 DAIEEMNGKELDGR 75
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 54.4 bits (125), Expect = 7e-08
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 319
R +VGGL + + DL++ F FG + D I N G+GFV F+D + DA+ E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 320 LNGKELLGERVVVEPAR 370
+NGKEL G + V A+
Sbjct: 67 MNGKELDGRVITVNEAQ 83
Score = 34.7 bits (76), Expect = 0.058
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +2
Query: 464 TRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYA----DAHK-QHRNEGVVEFATHSDMR 628
+ EYR V L+ + +DL+ Q G+V + D + R G V F MR
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 629 AAIEKLDGTELNGR 670
AIE+++G EL+GR
Sbjct: 62 DAIEEMNGKELDGR 75
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 340
V+ G + RE DLE+ F+ +G++ + +K G+ FV ED RDA+DA+ L+ E
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRK 63
Query: 341 GERVVVEPARGIDRSADRYRRG 406
G R+ VE + +R D+ G
Sbjct: 64 GRRLRVEWTKS-ERGGDKRSGG 84
Score = 44.4 bits (100), Expect = 7e-05
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Frame = +2
Query: 197 RERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVE----- 361
R RDLEK F+ +G+I ++ I+ + F+++E DA A+ N +L+ + + VE
Sbjct: 110 RTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKD 169
Query: 362 -PARGIDRSADRYR 400
ARG S +R R
Sbjct: 170 DDARGNGHSPERRR 183
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/52 (51%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +2
Query: 254 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDR-SADRYRRG 406
+K Y FVEF D RDADDA Y L+G++ G R+ VE +RG R S D RG
Sbjct: 1 MKRDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASRGAPRGSRDNGSRG 52
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 340
V+ G + RE DLE+ F+ +G++ + +K G+ FV ED RDA+DA+ L+ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63
Query: 341 GERVVVE 361
G R+ VE
Sbjct: 64 GRRLRVE 70
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 14/83 (16%)
Frame = +2
Query: 197 RERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVE----- 361
R RDLE+ F+ +G+I ++ I+ + F+++E DA A+ N +L+ + + VE
Sbjct: 109 RTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKD 168
Query: 362 ---------PARGIDRSADRYRR 403
P R DRS DR RR
Sbjct: 169 DDSRGNGYSPERRRDRSPDRRRR 191
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 340
V+ G + RE DLE+ F+ +G++ + +K G+ FV ED RDA+DA+ L+ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63
Query: 341 GERVVVE 361
G R+ VE
Sbjct: 64 GRRLRVE 70
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 14/83 (16%)
Frame = +2
Query: 197 RERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVE----- 361
R RDLE+ F+ +G+I ++ I+ + F+++E DA A+ N +L+ + + VE
Sbjct: 109 RTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKD 168
Query: 362 ---------PARGIDRSADRYRR 403
P R DRS DR RR
Sbjct: 169 DDSRGNGYSPERRRDRSPDRRRR 191
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 304
+++ +++++GGL +G + L F FG + D + G+GFV F D A
Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90
Query: 305 DAVYELNGKELLGERVVVEPA 367
A+ E++GKEL G + V PA
Sbjct: 91 AAISEMDGKELNGRHIRVNPA 111
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 584 RNEGVVEFATHSDMRAAIEKLDGTELNGRRVRL 682
R G V F AAI ++DG ELNGR +R+
Sbjct: 76 RGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 304
+++ +++++GGL +G + L F FG + D + G+GFV F D A
Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90
Query: 305 DAVYELNGKELLGERVVVEPA 367
A+ E++GKEL G + V PA
Sbjct: 91 AAISEMDGKELNGRHIRVNPA 111
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 584 RNEGVVEFATHSDMRAAIEKLDGTELNGRRVRL 682
R G V F AAI ++DG ELNGR +R+
Sbjct: 76 RGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 50.0 bits (114), Expect = 1e-06
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 10/94 (10%)
Frame = +2
Query: 158 GSR-VYVGGLPFGVRERDLEKFFKGFGRIRDILIKN-------GYGFVEFEDYRDADDAV 313
GS+ ++ G L + + D+E FFK G + D+ + + GYG +EF +A A+
Sbjct: 382 GSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKAL 441
Query: 314 YELNGKELLGERVVVEPA--RGIDRSADRYRRGD 409
E+NGK LLG V ++ A RG R+++ R+G+
Sbjct: 442 -EMNGKLLLGRDVRLDLANERGTPRNSNPGRKGE 474
Score = 35.1 bits (77), Expect = 0.044
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +2
Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYADAHK----QHRNEGVVEFATHSDMRAAIEKLD 649
L NLS +I+ D++++ ++AGEV + G +EFA+ + + A+E ++
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALE-MN 444
Query: 650 GTELNGRRVRL 682
G L GR VRL
Sbjct: 445 GKLLLGRDVRL 455
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 304
+ + S+++VGGL +G + L++ F FG + + + G+GFV F A+
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query: 305 DAVYELNGKELLGERVVVEPA 367
+A+ E++GKEL G ++ V A
Sbjct: 91 NAIKEMDGKELNGRQIRVNLA 111
Score = 37.1 bits (82), Expect = 0.011
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +2
Query: 479 RLIVENLSSRISWQDLKDYMRQAGEVTYAD--AHKQ---HRNEGVVEFATHSDMRAAIEK 643
+L V LS LK GEVT A A ++ R G V F+ AI++
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 644 LDGTELNGRRVRL 682
+DG ELNGR++R+
Sbjct: 96 MDGKELNGRQIRV 108
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 304
+ + S+++VGGL +G + L++ F FG + + + G+GFV F A+
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query: 305 DAVYELNGKELLGERVVVEPA 367
+A+ E++GKEL G ++ V A
Sbjct: 91 NAIKEMDGKELNGRQIRVNLA 111
Score = 37.1 bits (82), Expect = 0.011
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +2
Query: 479 RLIVENLSSRISWQDLKDYMRQAGEVTYAD--AHKQ---HRNEGVVEFATHSDMRAAIEK 643
+L V LS LK GEVT A A ++ R G V F+ AI++
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 644 LDGTELNGRRVRL 682
+DG ELNGR++R+
Sbjct: 96 MDGKELNGRQIRV 108
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 48.0 bits (109), Expect = 6e-06
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYEL 322
VYVGG+PF + E DL F +G I D+ LI++ G+ F+ +ED R AV L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 323 NGKELLGERVVVE 361
NG +LG + V+
Sbjct: 98 NGALVLGRTIKVD 110
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 48.0 bits (109), Expect = 6e-06
Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +2
Query: 254 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDR-SADRYRRG 406
+K Y FVEF D RDADDA + L+G++ G R+ VE +RG R S D RG
Sbjct: 1 MKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRG 52
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 48.0 bits (109), Expect = 6e-06
Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 13/189 (6%)
Frame = +2
Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDA 310
V +++Y G LP+ V L + + F RD G+ FV + D +
Sbjct: 83 VNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNII 142
Query: 311 VYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIV 490
+ L+G E LG + V AD+ + TE++L V
Sbjct: 143 IDNLDGTEYLGRALKVN-------FADKPKPNKEPLYP--------------ETEHKLFV 181
Query: 491 ENLSSRISWQDLKDYMRQAGEVTYA----DAHK-QHRNEGVVEFATHSDMRAAIEKLDGT 655
NLS ++ + L R+ G+V A D + R G V +++ ++M A+E LDG
Sbjct: 182 GNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGF 241
Query: 656 ELNGRRVRL 682
EL GR +R+
Sbjct: 242 ELEGRAIRV 250
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
+++VG L + V L F+ G + + GYGFV + + + A+
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 320 LNGKELLGERVVVEPARG 373
L+G EL G + V A+G
Sbjct: 238 LDGFELEGRAIRVNLAQG 255
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 47.6 bits (108), Expect = 8e-06
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 16/189 (8%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
R+YVG LP+ + +L + F G + D+ I G+GFV +A +A+
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 320 LNGKELLGERVVV---EPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIV 490
N ++ G V V E RG + R + D + + +++
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSY-------------VDSPHKVYA 223
Query: 491 ENLSSRISWQDLKD-YMRQAG----EVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGT 655
NL ++ Q LKD + Q G +V Y + R G + F + ++++A+ ++G
Sbjct: 224 GNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGV 283
Query: 656 ELNGRRVRL 682
E+ GR +RL
Sbjct: 284 EVEGRALRL 292
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 47.6 bits (108), Expect = 8e-06
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
R ++GGL + +R L F+ +G + + + G+GF+ F++ + D+A+
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDR 412
+NG +L G + V+ A+ A R GDR
Sbjct: 68 MNGMDLDGRTITVDKAQPHQGGAGRDNDGDR 98
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +2
Query: 185 PFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 364
P RERD+E+ F+ +G++ ++ ++ + FV+F DA A+ + +LL + V VE
Sbjct: 78 PIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEY 137
Query: 365 A-RGIDRSADRY 397
A R DRY
Sbjct: 138 ALREAGEREDRY 149
Score = 34.3 bits (75), Expect = 0.077
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 2/138 (1%)
Frame = +2
Query: 254 IKNGYGFVEFEDYRDADDAVYELNGKEL-LGER-VVVEPARGIDRSADRYRRGDRHXXXX 427
I GY FV FED RDA+DA+ + G R + VE A+ + R G
Sbjct: 7 IDAGYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDG------- 59
Query: 428 XXXXXXXXXXPPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEF 607
PT+T + + + + +R +D++ + G+V + RN V+F
Sbjct: 60 ----KAVSNQRPTKTLFVINFDPIRTR--ERDMERHFEPYGKVLNV---RMRRNFAFVQF 110
Query: 608 ATHSDMRAAIEKLDGTEL 661
AT D A++ ++L
Sbjct: 111 ATQEDATKALDSTHNSKL 128
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Frame = +2
Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 310
+ +RVYVG L + L + F G+G + D ++ G+GFV + + +A+ A
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAA 60
Query: 311 VYELNGKELLGERVVVE 361
V ++GKEL G RV V+
Sbjct: 61 VSGMDGKELNGRRVSVK 77
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Frame = +2
Query: 479 RLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQH-----RNEGVVEFATHSDMRAAIEK 643
R+ V NLS + L++ G V A + R G V +++HS+ AA+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 644 LDGTELNGRRV 676
+DG ELNGRRV
Sbjct: 64 MDGKELNGRRV 74
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNGKELL 340
++VGG+ V + DL + F FG + + I G GFV+F D + A+DA+ LNG ++
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNG-TVI 381
Query: 341 GERVVVEPARGIDRSADRYRRGD 409
G+ V RS ++ RGD
Sbjct: 382 GKNTV---RLSWGRSPNKQWRGD 401
Score = 35.9 bits (79), Expect = 0.025
Identities = 37/147 (25%), Positives = 53/147 (36%), Gaps = 7/147 (4%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERV---VVEPARGI----DRSADRYRRGDRHXX 421
GYGFV F D + A+ E+NG ++ + P R I S+ H
Sbjct: 245 GYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGS 304
Query: 422 XXXXXXXXXXXXPPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVV 601
T + V + + +DL+ Q GEV + G V
Sbjct: 305 NGSMGYGSQSDGESTNAT--IFVGGIDPDVIDEDLRQPFSQFGEVVSVKI-PVGKGCGFV 361
Query: 602 EFATHSDMRAAIEKLDGTELNGRRVRL 682
+FA AIE L+GT + VRL
Sbjct: 362 QFADRKSAEDAIESLNGTVIGKNTVRL 388
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 319
R +VGGL + +R LE F +G + D I N G+GFV F+D + DA+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 320 LNGKELLGERVVVEPAR 370
+NG++L G + V A+
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +2
Query: 473 EYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQH-----RNEGVVEFATHSDMRAAI 637
EYR V L+ + L+ Q G+V + R G V F M+ AI
Sbjct: 7 EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66
Query: 638 EKLDGTELNGRRV 676
E ++G +L+GR +
Sbjct: 67 EGMNGQDLDGRSI 79
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 319
R +VGGL + +R LE F +G + D I N G+GFV F+D + DA+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 320 LNGKELLGERVVVEPAR 370
+NG++L G + V A+
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +2
Query: 473 EYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQH-----RNEGVVEFATHSDMRAAI 637
EYR V L+ + L+ Q G+V + R G V F M+ AI
Sbjct: 7 EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66
Query: 638 EKLDGTELNGRRV 676
E ++G +L+GR +
Sbjct: 67 EGMNGQDLDGRSI 79
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 45.6 bits (103), Expect = 3e-05
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Frame = +2
Query: 98 SITC*FNFES*FIIVYWKMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI------- 256
SI+ F+F F S++++GGL + V E+ L+ F FG + ++ I
Sbjct: 20 SISSSFHFLPQFCTSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSG 79
Query: 257 -KNGYGFVEFEDYRDADDAVYELNGKELLG 343
G+GFV+F + DA A ++GK LLG
Sbjct: 80 RSRGFGFVDFAEEGDALSAKDAMDGKGLLG 109
Score = 36.3 bits (80), Expect = 0.019
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +2
Query: 479 RLIVENLSSRISWQDLKDYMRQAGEVT-----YADAHKQHRNEGVVEFATHSDMRAAIEK 643
+L + LS + Q LKD GEV Y + R G V+FA D +A +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 644 LDGTELNGRRVRL 682
+DG L GR +R+
Sbjct: 102 MDGKGLLGRPLRI 114
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNGKE 334
S ++VGGL V E DL + F FG + + I G GFV+F + + A++A+ LNG
Sbjct: 327 STIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNG-T 385
Query: 335 LLGERVV 355
++G+ V
Sbjct: 386 VIGKNTV 392
Score = 37.9 bits (84), Expect = 0.006
Identities = 34/140 (24%), Positives = 51/140 (36%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXX 442
GYGFV F D + A+ E+NG ++ V A +A + G +
Sbjct: 256 GYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGG 315
Query: 443 XXXXXPPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSD 622
+ V L + ++ +DL GEV + G V+FA
Sbjct: 316 NGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI-PVGKGCGFVQFANRQS 374
Query: 623 MRAAIEKLDGTELNGRRVRL 682
AI L+GT + VRL
Sbjct: 375 AEEAIGNLNGTVIGKNTVRL 394
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Frame = +2
Query: 194 VRERDLEKFFKGFGRIRDILI---KNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 364
V RDLE F +G I++I K + FVEF D R AD A+ LN E+ G+R+ +E
Sbjct: 233 VSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNRTEIAGKRIKLEH 292
Query: 365 AR 370
+R
Sbjct: 293 SR 294
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/67 (31%), Positives = 36/67 (53%)
Frame = +2
Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTEL 661
L+V NL+ +S +DL++ GE+ R+ VEF AA++ L+ TE+
Sbjct: 224 LVVFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNRTEI 283
Query: 662 NGRRVRL 682
G+R++L
Sbjct: 284 AGKRIKL 290
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 45.2 bits (102), Expect = 4e-05
Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 12/173 (6%)
Frame = +2
Query: 200 ERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYELNGKELLGERVV 355
ERD+ +FF G++RD+ I G G+VEF D A+ L+G+ LLG+ V+
Sbjct: 195 ERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI-ALSGQPLLGQPVM 253
Query: 356 VEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSSRISWQDLKDY 535
V+P+ A++ + P + RL V NL +S DL+
Sbjct: 254 VKPS-----EAEK----NLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKV 304
Query: 536 MRQAGEVTYADAHKQH----RNEGVVEFATHSDMRAAIEKLDGTELNGRRVRL 682
G V + + G V+FA D R A+ E+ GR +++
Sbjct: 305 FESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKV 357
Score = 41.5 bits (93), Expect = 5e-04
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIK-------NGYGFVEFEDYRDADDAVYEL 322
R+YVG L + E DL K F+ FG + + + G+GFV+F DA +A+ L
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NL 344
Query: 323 NGK-ELLGERVVV 358
NG+ E+ G + V
Sbjct: 345 NGQLEIAGRAIKV 357
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Frame = +2
Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNG 328
+ + ++VGGL V + DL++ F FG I + I G GFV+F + +A++A+ +LNG
Sbjct: 304 INTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNG 363
Query: 329 KELLGERVV 355
++G++ V
Sbjct: 364 -TVIGKQTV 371
Score = 44.8 bits (101), Expect = 5e-05
Identities = 36/140 (25%), Positives = 59/140 (42%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXX 442
GYGFV F D + A+ E+NG + + + PA R + Y++ +
Sbjct: 242 GYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPA--TPRKTNGYQQQGGYMPSGAFTRS 299
Query: 443 XXXXXPPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSD 622
T + V L S ++ +DLK + GE+ + G V+F +
Sbjct: 300 EGDTINTT-----IFVGGLDSSVTDEDLKQPFSEFGEIVSVKI-PVGKGCGFVQFVNRPN 353
Query: 623 MRAAIEKLDGTELNGRRVRL 682
A+EKL+GT + + VRL
Sbjct: 354 AEEALEKLNGTVIGKQTVRL 373
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNG 328
GYGFVEFE + AD + E NG
Sbjct: 147 GYGFVEFESHDVADKVLQEFNG 168
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 45.2 bits (102), Expect = 4e-05
Identities = 36/140 (25%), Positives = 59/140 (42%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXX 442
GYGFV F D + A+ E+NG + + + PA R + Y++ +
Sbjct: 240 GYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPA--TPRKTNGYQQQGGYMPNGTLTRP 297
Query: 443 XXXXXPPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSD 622
T + V L S ++ +DLK + GE+ + G V+F +
Sbjct: 298 EGDIMNTT-----IFVGGLDSSVTDEDLKQPFNEFGEIVSVKI-PVGKGCGFVQFVNRPN 351
Query: 623 MRAAIEKLDGTELNGRRVRL 682
A+EKL+GT + + VRL
Sbjct: 352 AEEALEKLNGTVIGKQTVRL 371
Score = 44.8 bits (101), Expect = 5e-05
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Frame = +2
Query: 152 MVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELN 325
++ + ++VGGL V + DL++ F FG I + I G GFV+F + +A++A+ +LN
Sbjct: 301 IMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLN 360
Query: 326 GKELLGERVV 355
G ++G++ V
Sbjct: 361 G-TVIGKQTV 369
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 254 IKNGYGFVEFEDYRDADDAVYELNG 328
+ GYGFVEFE + AD + E NG
Sbjct: 142 LSEGYGFVEFESHDVADKVLREFNG 166
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 44.8 bits (101), Expect = 5e-05
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 319
R +VGGL + + DL++ F FG + D I N G+GFV F+D + DA+ E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 320 LNG 328
+NG
Sbjct: 67 MNG 69
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 44.8 bits (101), Expect = 5e-05
Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 11/181 (6%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYE 319
+ VYV L + DL+ F +G+I ++ G+GFV FE+ DA AV
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 88
Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 499
LNG + + V A+ ++ +R L V+NL
Sbjct: 89 LNGHKFDDKEWYVGRAQ---------KKSERETELRVRYEQNLKEAADKFQSSNLYVKNL 139
Query: 500 SSRISWQDLKDYMRQAGEVTYA----DAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNG 667
IS + LK+ G VT + D + + G V FAT + A+ +L G +
Sbjct: 140 DPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIES 199
Query: 668 R 670
+
Sbjct: 200 K 200
Score = 31.1 bits (67), Expect = 0.72
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADD 307
K S +YV L + + L++ F FG + + G GFV F +A +
Sbjct: 128 KFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATE 187
Query: 308 AVYELNGKELLGERVVVEPAR 370
A+ +L+GK + + + V A+
Sbjct: 188 AMSQLSGKMIESKPLYVAIAQ 208
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 44.8 bits (101), Expect = 5e-05
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNG--YGFVEFEDYRDADDAVYELNGKELL 340
++VG LP G+ ER+L F FG + + + G Y FV F DA A+ L G L
Sbjct: 25 LWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESLQGFPLS 84
Query: 341 GERVVVEPARGIDRSADRYRRGD 409
G + +E A+ ++S+ R D
Sbjct: 85 GNPLRIEFAKA-EKSSTGSRTDD 106
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 44.8 bits (101), Expect = 5e-05
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNGYGFVEFEDYRDADDAVYELNGKE 334
VYVG + V E L++ F G G + + K+ YGFV + D R A A+ LNG+
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRH 115
Query: 335 LLGERVVV 358
L G+ + V
Sbjct: 116 LFGQPIKV 123
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 44.4 bits (100), Expect = 7e-05
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Frame = +2
Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 310
V S++++GGL F E+ L + F G++ + I G+GFV F +A A
Sbjct: 32 VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91
Query: 311 VYELNGKELLGERVVVEPAR 370
+ E NG++L G + V+ A+
Sbjct: 92 LMEFNGQQLNGRTIFVDYAK 111
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 44.4 bits (100), Expect = 7e-05
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Frame = +2
Query: 197 RERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVE----- 361
R RDLEK F+ +G+I ++ I+ + F+++E DA A+ N +L+ + + VE
Sbjct: 69 RTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKD 128
Query: 362 -PARGIDRSADRYR 400
ARG S +R R
Sbjct: 129 DDARGNGHSPERRR 142
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 44.4 bits (100), Expect = 7e-05
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Frame = +2
Query: 173 VGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYELNG 328
V L R+ DL K F+ FG ++DI + G+GFV+F D DA DA + ++G
Sbjct: 40 VRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDG 99
Query: 329 KELLGERVVV 358
LLG + V
Sbjct: 100 YLLLGRELTV 109
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 44.0 bits (99), Expect = 9e-05
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
+++VGGLP + E + + +F FG I D+++ G+GF+ F D DA D V
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLH 169
Query: 320 LNGKELLGERVVVEPA 367
EL G+ V V+ A
Sbjct: 170 KTFHELNGKLVEVKRA 185
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 44.0 bits (99), Expect = 9e-05
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
+++VGGLP + E + + +F FG I D+++ G+GF+ F D DA D V
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLH 169
Query: 320 LNGKELLGERVVVEPA 367
EL G+ V V+ A
Sbjct: 170 KTFHELNGKLVEVKRA 185
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 44.0 bits (99), Expect = 9e-05
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
+++VGGLP + E + + +F FG I D+++ G+GF+ F D DA D V
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLH 169
Query: 320 LNGKELLGERVVVEPA 367
EL G+ V V+ A
Sbjct: 170 KTFHELNGKLVEVKRA 185
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 44.0 bits (99), Expect = 9e-05
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAV 313
G+R+YVG L +GV + LE F G++ RD G+GFV ++ A+
Sbjct: 248 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 307
Query: 314 YELNGKELLGERVVVEPA 367
LNG +L G ++ V A
Sbjct: 308 NSLNGADLDGRQIRVSEA 325
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
+++VG L F V L + F+ G + + + G+GFV + + A +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDR 412
NG E G + V + + + RG R
Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKREESFSRGPR 190
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 44.0 bits (99), Expect = 9e-05
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAV 313
G+R+YVG L +GV + LE F G++ RD G+GFV ++ A+
Sbjct: 256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 315
Query: 314 YELNGKELLGERVVVEPA 367
LNG +L G ++ V A
Sbjct: 316 NSLNGADLDGRQIRVSEA 333
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
+++VG L F V L + F+ G + + + G+GFV + + A +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDR 412
NG E G + V + + + RG R
Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKREESFSRGPR 190
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 44.0 bits (99), Expect = 9e-05
Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 4/175 (2%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNGYGFVEFEDYRDADDAVYELNGKE 334
VY G + V E L++ F G I + K+ YGFV + D R A A+ LNG+
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRH 124
Query: 335 LLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSSRIS 514
+ G+ + V A Y G R P T+ L S +
Sbjct: 125 IFGQPMKVNWA---------YATGQREDTSSHFNIFVGDLSPEV-TDAAL----FDSFSA 170
Query: 515 WQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVR 679
+ Y R A V + + R G V F D + AI +++G ++ R++R
Sbjct: 171 FNSCSSYYRDA-RVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIR 224
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 44.0 bits (99), Expect = 9e-05
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV 313
G+ +YV GL V ERDLE F G++ D+ + G+GF+ + DA+ +
Sbjct: 74 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 133
Query: 314 YELNGKELLGERVVVEPAR 370
L+ L G + VE AR
Sbjct: 134 RSLDHSVLQGRVITVEKAR 152
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 43.6 bits (98), Expect = 1e-04
Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 13/187 (6%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVY 316
++++VG LP+ V + L F+ G + RD G+GFV +A+ AV
Sbjct: 113 AKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 172
Query: 317 ELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVEN 496
+ N E+ G R+ V +R+A R R +R +R+ V N
Sbjct: 173 KFNSFEVNGRRLTV------NRAAPRGSRPERQPRVYD-------------AAFRIYVGN 213
Query: 497 LSSRISWQDLKDYMRQAGEVTYADAHK-----QHRNEGVVEFATHSDMRAAIEKLDGTEL 661
L + L+ + G+V A + R G V+ + +++ AI LDG L
Sbjct: 214 LPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNL 273
Query: 662 NGRRVRL 682
GR +++
Sbjct: 274 EGRAIKV 280
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
R+YVG LP+ V LE+ F G++ D + G+GFV+ + + + A+
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 320 LNGKELLGERVVVEPA 367
L+G+ L G + V A
Sbjct: 268 LDGQNLEGRAIKVNVA 283
Score = 37.9 bits (84), Expect = 0.006
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +2
Query: 458 PPTRTEYRLIVENLSSRISWQDLKDYMRQAG-----EVTYADAHKQHRNEGVVEFATHSD 622
P E +L V NL + Q L QAG EV Y Q R G V +T +
Sbjct: 107 PEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEE 166
Query: 623 MRAAIEKLDGTELNGRRV 676
A+EK + E+NGRR+
Sbjct: 167 AEKAVEKFNSFEVNGRRL 184
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGY--GFVEFEDYRDADDAVYELNGKELL 340
++VGGL V + +L+ F FG + + I G GFV++ + A+ A+ LNG +L
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLG 321
Query: 341 GERVVVEPARGIDRSADR 394
G+ + + R ++ +D+
Sbjct: 322 GQSIRLSWGRSPNKQSDQ 339
Score = 40.7 bits (91), Expect = 9e-04
Identities = 35/140 (25%), Positives = 59/140 (42%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXX 442
GYGFV F D + A+ E+NG+ + + PA A++ +
Sbjct: 197 GYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPA------ANKNALPMQPAMYQNTQGA 250
Query: 443 XXXXXPPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSD 622
P T + V L + ++ +LK Q GE+ + R G V++A +
Sbjct: 251 NAGDNDPNNTT--IFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRC-GFVQYANKAS 307
Query: 623 MRAAIEKLDGTELNGRRVRL 682
A+ L+GT+L G+ +RL
Sbjct: 308 AEHALSVLNGTQLGGQSIRL 327
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 304
+ + +++Y+GGL G E L+ F F + + + GYGFV F A+
Sbjct: 27 RYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSAN 86
Query: 305 DAVYELNGKELLGERVVVEPAR 370
A+ +NG+EL G + V A+
Sbjct: 87 SAISAMNGQELNGFNISVNVAK 108
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAV 313
GS V++GGLP V E DL + G I ++ L+K+ GY FV F+ A A+
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 314 YELNGKELLGERV 352
EL+ KE G+ +
Sbjct: 175 EELHSKEFKGKTI 187
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
++++ GL F E+ L F+GFG + ++ I GY F+E+ A A+ E
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 320 LNGKELLGERVVVEPAR 370
+NGK + G +VV+ A+
Sbjct: 343 MNGKIINGWMIVVDVAK 359
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVY 316
+++YVGGLP+ R+ L FFK FG I R+ GYGFV F+D A A
Sbjct: 13 TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72
Query: 317 ELN 325
+ N
Sbjct: 73 DPN 75
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD----D 307
+++VGGLP + E + + +F FG I D+++ G+GF+ F+ D
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 182
Query: 308 AVYELNGKELLGERVV 355
+ELNGK + +R V
Sbjct: 183 TFHELNGKMVEVKRAV 198
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRD--ILI------KNGYGFVEFEDYRDADDAVYE 319
R +VGGL + E+ +E+ F FG + D I+I G+ FV F+D A+
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104
Query: 320 LNGKELLGERVVVEPARG 373
+NG+EL G + + ARG
Sbjct: 105 MNGQELDGRNITAQ-ARG 121
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
+++VGGL V E + +K+F FG I D+++ G+GF+ + D +A D V +
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISY-DSEEAVDKVLQ 92
Query: 320 LNGKELLGERVVVEPARGIDRSADRYR 400
EL G+ V V+ A D + + R
Sbjct: 93 KTFHELNGKMVEVKLAVPKDMALNTMR 119
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
+++VGGL V E + +K+F FG I D+++ G+GF+ + D +A D V +
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISY-DSEEAVDKVLQ 165
Query: 320 LNGKELLGERVVVEPARGIDRSADRYR 400
EL G+ V V+ A D + + R
Sbjct: 166 KTFHELNGKMVEVKLAVPKDMALNTMR 192
Score = 40.3 bits (90), Expect = 0.001
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 12/190 (6%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 304
+M ++++GG+ + E L +F FG + + +I G+GFV F D A+
Sbjct: 2 EMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
Query: 305 DAVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRL 484
V K ++ + +VE + + R D H P+ ++ ++
Sbjct: 62 RVVLL---KHIIDGK-IVEAKKAVPR--------DDHVVFNKSNSSLQGSPGPSNSK-KI 108
Query: 485 IVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHS-DMRAAIEK-LDGT- 655
V L+S ++ + K Y Q G +T HR + F S D A++K L T
Sbjct: 109 FVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTF 168
Query: 656 -ELNGRRVRL 682
ELNG+ V +
Sbjct: 169 HELNGKMVEV 178
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
+++VGGL V E + +K+F FG I D+++ G+GF+ + D +A D V +
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISY-DSEEAVDKVLQ 165
Query: 320 LNGKELLGERVVVEPARGIDRSADRYR 400
EL G+ V V+ A D + + R
Sbjct: 166 KTFHELNGKMVEVKLAVPKDMALNTMR 192
Score = 40.3 bits (90), Expect = 0.001
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 12/190 (6%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 304
+M ++++GG+ + E L +F FG + + +I G+GFV F D A+
Sbjct: 2 EMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
Query: 305 DAVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRL 484
V K ++ + +VE + + R D H P+ ++ ++
Sbjct: 62 RVVLL---KHIIDGK-IVEAKKAVPR--------DDHVVFNKSNSSLQGSPGPSNSK-KI 108
Query: 485 IVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHS-DMRAAIEK-LDGT- 655
V L+S ++ + K Y Q G +T HR + F S D A++K L T
Sbjct: 109 FVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTF 168
Query: 656 -ELNGRRVRL 682
ELNG+ V +
Sbjct: 169 HELNGKMVEV 178
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 42.3 bits (95), Expect = 3e-04
Identities = 46/175 (26%), Positives = 70/175 (40%), Gaps = 4/175 (2%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNGYGFVEFEDYRDADDAVYELNGKE 334
VYVG + V E L++ F G + + K+ YGFV + D R A A+ LNG+
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRH 120
Query: 335 LLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSSRIS 514
L G+ + V A Y G R P T+ L ++ S S
Sbjct: 121 LFGQPIKVNWA---------YATGQREDTSSHFNIFVGDLSPEV-TDATL-YQSFSVFSS 169
Query: 515 WQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVR 679
D + V + + R G V F D + AI +++G L+ R++R
Sbjct: 170 CSDAR--------VMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIR 216
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Frame = +2
Query: 173 VGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYELNG 328
V L R+ DL + F+ FG ++DI + G+GF++F D DA +A ++++G
Sbjct: 41 VRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDG 100
Query: 329 KELLGERVVVEPARGIDRSADRYRRGDR 412
LLG + V A + R DR
Sbjct: 101 YLLLGRELTVVFAEENRKKPTEMRTRDR 128
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 319
+++VGGL E + + +F+ FGR D+++ + G+GFV + D D+ + V +
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTY-DSEDSVEVVMQ 179
Query: 320 LNGKELLGERVVVEPA 367
N EL +RV V+ A
Sbjct: 180 SNFHELSDKRVEVKRA 195
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--------NGYGFVEFEDYRDADDAV 313
GS VY+GG+P E DL+ F G + ++ I GY FV F A +A+
Sbjct: 91 GSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAI 150
Query: 314 YELNGKELLGERV 352
LN + G+R+
Sbjct: 151 DTLNNTDFRGKRI 163
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 41.5 bits (93), Expect = 5e-04
Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 13/186 (6%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI------KN-GYGFVEFEDYRDADDAVYEL 322
+++V LP+ + D+ + F G + ++ I KN G+ FV +A A+ +
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKF 155
Query: 323 NGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLS 502
+ ++ G + V AR + + P T ++L V NL+
Sbjct: 156 DTFQVSGRIISVSFARRFKKPTPK-------------SPNDLPSPAPGDTRHKLYVSNLA 202
Query: 503 SRISWQDLK------DYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELN 664
+ L+ D+ + V +AD + G V FAT + AI KL+G E+
Sbjct: 203 WKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIM 262
Query: 665 GRRVRL 682
GR + L
Sbjct: 263 GRPITL 268
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +2
Query: 260 NGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSADRYRRGD 409
+GYGFV F +A++A+ +LNGKE++G + ++ + RSA GD
Sbjct: 236 SGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSL---RSASESEDGD 282
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 41.5 bits (93), Expect = 5e-04
Identities = 44/179 (24%), Positives = 69/179 (38%), Gaps = 11/179 (6%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADD 307
K+ + VYV L + + +L K F FG +I G+GFV FE+ DA
Sbjct: 220 KVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAAR 279
Query: 308 AVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLI 487
AV LNGK + V A+ ++ +R L
Sbjct: 280 AVDALNGKTFDDKEWFVGKAQ---------KKSERETELKQKFEQSLKEAADKSQGSNLY 330
Query: 488 VENLSSRISWQDLKDYMRQAGEVT----YADAHKQHRNEGVVEFATHSDMRAAIEKLDG 652
V+NL ++ L+++ G +T D R G V F+T + AI +++G
Sbjct: 331 VKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNG 389
Score = 37.1 bits (82), Expect = 0.011
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRI------RDIL-IKNGYGFVEFEDYRDADD 307
K GS +YV L V + L + F FG I RD + G GFV F +A
Sbjct: 323 KSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATR 382
Query: 308 AVYELNGKELLGERVVVEPA-RGIDRSA 388
A+ E+NGK ++ + + V A R DR A
Sbjct: 383 AITEMNGKMIVTKPLYVALAQRKEDRKA 410
Score = 32.3 bits (70), Expect = 0.31
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYELN 325
+++ L + + L + F FG I + GYGFV+++ A A+ +LN
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194
Query: 326 GKELLGERVVVEP 364
G L ++V V P
Sbjct: 195 GMLLNDKQVYVGP 207
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI------RDILIKN--GYGFVEFEDYRDADDAVYEL 322
+YVG L V + L + F G++ RD+ + GYG+V + +DA A+ EL
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 323 NGKELLGERVVV 358
N L G + V
Sbjct: 107 NFMALNGRAIRV 118
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +2
Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNE-----GVVEFATHSDMRAAIEKL 646
L V +L + ++ L + QAG+V + G V +AT D A+ +L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 647 DGTELNGRRVRLV 685
+ LNGR +R++
Sbjct: 107 NFMALNGRAIRVM 119
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 41.5 bits (93), Expect = 5e-04
Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 15/185 (8%)
Frame = +2
Query: 158 GSR-VYVGGLPFGVRERDLEKFFKGFGRIRDILIK--------NGYGFVEFEDYRDADDA 310
GS+ ++ L F + D+E FFK G + D+ G+G VEF +A A
Sbjct: 295 GSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKA 354
Query: 311 VYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIV 490
+ E +G+ LLG + +D + +R RG+R E ++ V
Sbjct: 355 L-EFHGRPLLGREI------RLDIAQERGERGER--PAFTPQSGNFRSGGDGGDEKKIFV 405
Query: 491 ENLSSRISWQDLKDYMRQ----AGEVTYADA--HKQHRNEGVVEFATHSDMRAAIEKLDG 652
+ + +S D+K+ +R+ GE+ + N + + S+ + +L+G
Sbjct: 406 KGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKEKALELNG 465
Query: 653 TELNG 667
+++ G
Sbjct: 466 SDMGG 470
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 41.5 bits (93), Expect = 5e-04
Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 11/185 (5%)
Frame = +2
Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRD-ILIKNG------YGFVEFEDYRDADDAV 313
V + VYV L + DL++ F FG I +++K+G +GFV FE A A+
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAI 176
Query: 314 YELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVE 493
++NG VV E + R+ + R + TR L V+
Sbjct: 177 EKMNGV------VVDEKELHVGRAQRKTNRTE--DLKAKFELEKIIRDMKTRKGMNLYVK 228
Query: 494 NLSSRISWQDLKDYMRQAGEVTYAD--AHKQHRNEGV--VEFATHSDMRAAIEKLDGTEL 661
NL + L++ + G +T H ++GV VEF+T + A+ K++G +
Sbjct: 229 NLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMV 288
Query: 662 NGRRV 676
+ +
Sbjct: 289 GNKPI 293
Score = 36.7 bits (81), Expect = 0.014
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDIL-------IKNGYGFVEFEDYRDADDAVY 316
G +YV L V LE+ F FG I I G GFVEF +A A+
Sbjct: 222 GMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAML 281
Query: 317 ELNGKELLGERVVVEPAR 370
++NGK + + + V A+
Sbjct: 282 KMNGKMVGNKPIYVSLAQ 299
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 41.5 bits (93), Expect = 5e-04
Identities = 37/140 (26%), Positives = 57/140 (40%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXX 442
GYGFV F D + A+ E+NG + + PA ++ + G R
Sbjct: 198 GYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPA-----ASKKGVTGQRDSYQSSAAGV 252
Query: 443 XXXXXPPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSD 622
P T + V L + ++ LK+ Q GE+ + R G V+F+ S
Sbjct: 253 TTDNDPNNTT---VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRC-GFVQFSEKSC 308
Query: 623 MRAAIEKLDGTELNGRRVRL 682
A+ L+G +L G VRL
Sbjct: 309 AEEALRMLNGVQLGGTTVRL 328
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 41.1 bits (92), Expect = 7e-04
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVYE 319
RVYVG LP+ V LE+ F G++ R+ G+GFV D + ++A+
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 320 LNGKELLGERVVVEPA 367
L+G+ L G + V A
Sbjct: 305 LDGQNLEGRAIRVNVA 320
Score = 35.5 bits (78), Expect = 0.033
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +2
Query: 458 PPTRTEYRLIVENLSSRISWQDLKDYMRQAG-----EVTYADAHKQHRNEGVVEFATHSD 622
P E +L V NL+ ++ Q L QAG EV Y Q R G V ++ +
Sbjct: 144 PEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDE 203
Query: 623 MRAAIEKLDGTELNGR 670
A+EK + +LNGR
Sbjct: 204 AETAVEKFNRYDLNGR 219
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
+++VGGLP + + + ++F+ +G + D+ I G+GFV F D DA D+V
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF-DSEDAVDSVLH 169
Query: 320 LNGKELLGERVVVEPA 367
+L G++V V+ A
Sbjct: 170 KTFHDLSGKQVEVKRA 185
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +2
Query: 206 DLEKFFKGFGRIRDILI---KNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPAR 370
DL F G I++I K + FVEF D R A+ A+ LN E+ G+R+ VEP+R
Sbjct: 268 DLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPSR 325
Score = 32.3 bits (70), Expect = 0.31
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +2
Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTEL 661
L+V NL IS DL GE+ R+ VEF AA++ L+ E+
Sbjct: 255 LVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEI 314
Query: 662 NGRRVRL 682
G+R+++
Sbjct: 315 AGKRIKV 321
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +2
Query: 206 DLEKFFKGFGRIRDILI---KNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPAR 370
DL F G I++I K + FVEF D R A+ A+ LN E+ G+R+ VEP+R
Sbjct: 268 DLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPSR 325
Score = 32.3 bits (70), Expect = 0.31
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +2
Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTEL 661
L+V NL IS DL GE+ R+ VEF AA++ L+ E+
Sbjct: 255 LVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEI 314
Query: 662 NGRRVRL 682
G+R+++
Sbjct: 315 AGKRIKV 321
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 40.7 bits (91), Expect = 9e-04
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Frame = +2
Query: 209 LEKFFKGFGRIRDIL---IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPAR 370
L + F+ +G I+++ K FVEF D RDA A +NGKE+ G++VV+E +R
Sbjct: 229 LRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQVVIEFSR 285
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 40.7 bits (91), Expect = 9e-04
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV 313
G+ +YV GL V ERDLE F G++ D+ + G+GF+ + DA+ +
Sbjct: 44 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 103
Query: 314 YELNGKELLGERVVVE 361
L+ L G + VE
Sbjct: 104 RSLDHSVLQGRVITVE 119
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVY 316
S ++V G V E L+K F FG++ ++ +I N GYG+V F DA AV
Sbjct: 77 SSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVE 136
Query: 317 ELNGKELLGERVVVE 361
+NGK G ++V+
Sbjct: 137 AMNGKFFDGRFILVK 151
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +2
Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYA-----DAHKQHRNEGVVEFATHSDMRAAIEKL 646
L V+ S +S LK + G+VT + +Q G V F + D ++A+E +
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 138
Query: 647 DGTELNGR 670
+G +GR
Sbjct: 139 NGKFFDGR 146
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 322
V+ +P ERD+ +FF G++RD+ + G G++EF D A+ L
Sbjct: 170 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-AL 228
Query: 323 NGKELLGERVVVEPA 367
+G+ LG+ V+V+P+
Sbjct: 229 SGQLFLGQPVMVKPS 243
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--------NGYGFVEFEDYRDADDAVYE 319
++YVG L F + E L + F+ FG + + + G+GF++F + A
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 320 LNGK-ELLGERVVV 358
LNGK E+ G + V
Sbjct: 326 LNGKLEIAGRTIKV 339
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 40.3 bits (90), Expect = 0.001
Identities = 41/187 (21%), Positives = 76/187 (40%), Gaps = 14/187 (7%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
RVY+G +P V L K + G + + + +GF + DA+ V +
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 320 LNGKELLGERVVVE-PARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVEN 496
LNG + G + V + I S D + Y++ V N
Sbjct: 137 LNGNTVEGREIKVNITEKPIASSPD-------------LSVLQSEDSAFVDSPYKVYVGN 183
Query: 497 LSSRISWQDLKDYMRQAGEVTYADAHK-----QHRNEGVVEFATHSDMRAAIEKLDGTEL 661
L+ ++ + L++ + G+V A + + G V F++ D+ AAI L+ + L
Sbjct: 184 LAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLL 243
Query: 662 NGRRVRL 682
G+++R+
Sbjct: 244 EGQKIRV 250
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 12/76 (15%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV-- 313
+++VGGLP V E D + +F+ FG D+++ G+GF+ ++ + +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 314 --YELNGKELLGERVV 355
+ELNGK + +R V
Sbjct: 169 TFHELNGKMVEVKRAV 184
Score = 39.1 bits (87), Expect = 0.003
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 14/187 (7%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGR-IRDILIKN-------GYGFVEFEDYRDADDAVYE 319
++++GG+ + E L+++F FG I +++K+ G+GFV F D A+ + E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 499
K + R +VE + + R D +R P RT ++ V L
Sbjct: 67 ---KHNIDGR-LVEAKKAVPR--DDQNMVNRSNSSSIQGSPGG----PGRTR-KIFVGGL 115
Query: 500 SSRISWQDLKDYMRQAG---EVTYADAHKQHRNEGVVEFATHSDMRAAIEKL---DGTEL 661
S ++ D K Y Q G +V H R G F T+ D A+EK+ EL
Sbjct: 116 PSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRG-FGFITY-DSEEAVEKVLLKTFHEL 173
Query: 662 NGRRVRL 682
NG+ V +
Sbjct: 174 NGKMVEV 180
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 12/76 (15%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV-- 313
+++VGGLP V E D + +F+ FG D+++ G+GF+ ++ + +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 314 --YELNGKELLGERVV 355
+ELNGK + +R V
Sbjct: 169 TFHELNGKMVEVKRAV 184
Score = 39.1 bits (87), Expect = 0.003
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 14/187 (7%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGR-IRDILIKN-------GYGFVEFEDYRDADDAVYE 319
++++GG+ + E L+++F FG I +++K+ G+GFV F D A+ + E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 499
K + R +VE + + R D +R P RT ++ V L
Sbjct: 67 ---KHNIDGR-LVEAKKAVPR--DDQNMVNRSNSSSIQGSPGG----PGRTR-KIFVGGL 115
Query: 500 SSRISWQDLKDYMRQAG---EVTYADAHKQHRNEGVVEFATHSDMRAAIEKL---DGTEL 661
S ++ D K Y Q G +V H R G F T+ D A+EK+ EL
Sbjct: 116 PSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRG-FGFITY-DSEEAVEKVLLKTFHEL 173
Query: 662 NGRRVRL 682
NG+ V +
Sbjct: 174 NGKMVEV 180
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVY 316
S+++VGGL L++ F FG+I D ++ G+GFV ++ A++A+
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 317 ELNGKELLGERVVVEPA 367
+ KEL G + V PA
Sbjct: 96 AMQNKELDGRIIGVHPA 112
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 39.9 bits (89), Expect = 0.002
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 9/181 (4%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKG-FGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 319
V+VG L V + L + FK + ++ + N GYGFV F D + A+ E
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 499
+NG+ + PA A++ + PT T + V +
Sbjct: 235 MNGQYCSSRPMRTGPA------ANK-KPLTMQPASYQNTQGNSGESDPTNTT--IFVGAV 285
Query: 500 SSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVR 679
++ DLK Q GE+ + R G V++A + A+ L+GT+L G+ +R
Sbjct: 286 DQSVTEDDLKSVFGQFGELVHVKIPAGKRC-GFVQYANRACAEQALSVLNGTQLGGQSIR 344
Query: 680 L 682
L
Sbjct: 345 L 345
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Frame = +2
Query: 152 MVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADD 307
+ R++V GL L+ F FG++ D + G+GFV + DA+
Sbjct: 31 LTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEK 90
Query: 308 AVYELNGKELLGERVVVEPAR 370
A E+N K L G + V+PAR
Sbjct: 91 AKAEMNAKFLDGWVIFVDPAR 111
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +2
Query: 179 GLPFGVRERDLEKFFKGFGR-IRDILIKN--GYGFVEFEDYRDADDAVYELNGKELLGER 349
GL ++ L + F F R I+D + G+GF+ FE DA A+ LNGK + G
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRL 136
Query: 350 VVVEPARGID 379
+ VE A+ ++
Sbjct: 137 IFVETAKEVE 146
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Frame = +2
Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 310
+G++++VG LP DL +F FG I+D I G+GFV F + AD
Sbjct: 238 IGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRV 297
Query: 311 VYELNGKELLGERVVVEPARGIDRS 385
E+ G+ V ++ A +D +
Sbjct: 298 A--RRSHEICGQEVAIDSATPLDEA 320
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDAD 304
K + ++++V L ++ L + F FG+I++ LI++ G+GF+ F+ DA
Sbjct: 3 KRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDAR 62
Query: 305 DAVYELNGKELLGERVVVEPARGID 379
A+ L+GK + G + VE A+ +
Sbjct: 63 KALKSLDGKIVDGRLIFVEVAKNAE 87
Score = 31.5 bits (68), Expect = 0.54
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +2
Query: 467 RTEYRLIVENLSSRISWQDLKDYMRQAGEVTYA----DAHKQH-RNEGVVEFATHSDMRA 631
R +L V LS+ + Q L+ G++ A D+ Q + G + F + D R
Sbjct: 4 RISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARK 63
Query: 632 AIEKLDGTELNGRRV 676
A++ LDG ++GR +
Sbjct: 64 ALKSLDGKIVDGRLI 78
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 251 LIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDR-SADRYRRG 406
L+ + + EF D RDADDA + L+G++ G R+ VE +RG R S D RG
Sbjct: 11 LLSSHFRNQEFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRG 63
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 39.5 bits (88), Expect = 0.002
Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 11/185 (5%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRD-ILIKNG------YGFVEFEDYRDADD 307
KM + VYV L + +L+ F +G I +++++G +GFV FE+ DA
Sbjct: 221 KMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAAR 280
Query: 308 AVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLI 487
AV LNGK+ + V A+ ++ +R L
Sbjct: 281 AVEALNGKKFDDKEWYVGKAQ---------KKSERELELSRRYEQGSSDGGNKFDGLNLY 331
Query: 488 VENLSSRISWQDLKDYMRQAGEVT----YADAHKQHRNEGVVEFATHSDMRAAIEKLDGT 655
V+NL ++ + L++ + G +T D + G V F+ S+ + +++G
Sbjct: 332 VKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGK 391
Query: 656 ELNGR 670
+ G+
Sbjct: 392 MVGGK 396
Score = 38.7 bits (86), Expect = 0.004
Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 11/179 (6%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYELN 325
++V L V + L + F G G I + GYGFV+F+ A +A+ +LN
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 326 GKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSS 505
GK L +++ V P R +R D+ + V+NLS
Sbjct: 196 GKVLNDKQIFVGP---FLRKEERESAADKMKFT------------------NVYVKNLSE 234
Query: 506 RISWQDLKDYMRQAGEVTYA----DAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGR 670
+ +LK Q G ++ A D + R G V F D A+E L+G + + +
Sbjct: 235 ATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDK 293
Score = 37.5 bits (83), Expect = 0.008
Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 12/182 (6%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI------RDILIKN--GYGFVEFEDYRDADDAVYEL 322
+YVG L F V + L +F ++ RD GYG+V + + DA+ A+ +L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 323 NGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLS 502
N L G+ + + + D SA R G+ L V+NL
Sbjct: 108 NYSYLNGKMIRITYSSR-DSSARRSGVGN------------------------LFVKNLD 142
Query: 503 SRISWQDLKDYMRQAGEVTYADAHKQH----RNEGVVEFATHSDMRAAIEKLDGTELNGR 670
+ + L + G + H R G V+F T + AIEKL+G LN +
Sbjct: 143 KSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDK 202
Query: 671 RV 676
++
Sbjct: 203 QI 204
Score = 31.9 bits (69), Expect = 0.41
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Frame = +2
Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADD 307
K G +YV L V + L + F FG I + G GFV F +A
Sbjct: 324 KFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASR 383
Query: 308 AVYELNGKELLGERVVVEPAR 370
+ E+NGK + G+ + V A+
Sbjct: 384 VLNEMNGKMVGGKPLYVALAQ 404
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK--------NGYGFVEFEDYRDADDAVYEL 322
+ V G+ +E D+ F FG I+++ + GY +E+E +A A+ +
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 323 NGKELLGERVVVEPARGIDRS-ADRYRR 403
NG ELL + V V+ A S + YRR
Sbjct: 157 NGAELLTQNVSVDWAFSSGPSGGESYRR 184
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-----KNGYGFVEFEDYRDADDAVYELNGK 331
+YV LPF + ++ F +G IR I I G FV +ED DA +AV L+G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSGF 80
Query: 332 ELLGERVVV 358
+ ++V
Sbjct: 81 NVANRYLIV 89
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI---LIKNGYGFVEFEDYRDADDAVYELNGKEL 337
++V L + +L F +G IR++ + +N ++EF D R A A+ LNG E+
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQGLNGLEV 356
Query: 338 LGERVVVEP 364
G ++ + P
Sbjct: 357 AGRQLKLAP 365
Score = 34.7 bits (76), Expect = 0.058
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +2
Query: 470 TEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLD 649
+E L V NL S IS ++L GE+ ++ +EF + A++ L+
Sbjct: 293 SEGALWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQGLN 352
Query: 650 GTELNGRRVRL 682
G E+ GR+++L
Sbjct: 353 GLEVAGRQLKL 363
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNG----YGFVEFEDYRDADDAVYEL 322
+Y+G +P G E ++E FF FG ++ + + K G +GF++FED A+ A +
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 323 NGKELLGERV---VVEP 364
N L+ + V+EP
Sbjct: 122 NDYLLMEHMLKVHVIEP 138
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 39.1 bits (87), Expect = 0.003
Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 4/175 (2%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNGYGFVEFEDYRDADDAVYELNGKE 334
VY G + V E L++ F G I + K+ YGFV + D R A A+ LNG+
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRH 124
Query: 335 LLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSSRIS 514
+ G+ + V A Y G R P T+ L ++ S+ S
Sbjct: 125 IFGQPMKVNWA---------YATGQREDTSSHFNIFVGDLSPEV-TDAALF-DSFSAFNS 173
Query: 515 WQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVR 679
D + V + + R G V F D + AI +++G ++ R++R
Sbjct: 174 CSDAR--------VMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIR 220
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
+++VGG+P V + + ++FF FG +++ I G+GFV +E D + +
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 320 LNGKELLGERVVVEPA 367
N EL G +V ++ A
Sbjct: 191 GNRIELSGTQVEIKKA 206
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYEL 322
+++VG LP V E +++ F +G I+D+ I G F+++E A A+ +
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 323 NGKELLGERVVVEPARGIDRSADRYRR 403
NGK + V + D +R+ R
Sbjct: 167 NGKHKMEGSTVPLVVKWADTERERHTR 193
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYEL 322
+++VG LP V E +++ F +G I+D+ I G F+++E A A+ +
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 323 NGKELLGERVVVEPARGIDRSADRYRR 403
NGK + V + D +R+ R
Sbjct: 167 NGKHKMEGSTVPLVVKWADTERERHTR 193
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV 313
G+ +++ +P +++L F+ FG + + +GFV ++ A +A+
Sbjct: 348 GANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAI 407
Query: 314 YELNGKELLGERVVVEPAR 370
+NG+ L G+++ V+ R
Sbjct: 408 DMMNGRHLGGKKLKVQLKR 426
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVY 316
S ++V G V E L+K F FG++ ++ +I N GYG+V F DA AV
Sbjct: 58 SSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVE 117
Query: 317 ELNGK 331
+NGK
Sbjct: 118 AMNGK 122
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KN-GYGFVEFEDYRDADDAVY 316
+++VG LP +++ + E+FF+ FG I ++++ KN G+GF+ + + A AV
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAV- 224
Query: 317 ELNGKELLGERVVVE 361
E +G E G + V+
Sbjct: 225 EFDGVEFHGRILTVK 239
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 37.9 bits (84), Expect = 0.006
Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 11/176 (6%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI------RDILIKN-GYGFVEFEDYRDADDAVYELN 325
V++ L + + L + F FG I D++ ++ GYGFV+FE A A+ +LN
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 193
Query: 326 GKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSS 505
G L ++V V RR DR P+ T + V+NL
Sbjct: 194 GMLLNDKQVFV---------GHFVRRQDR--------ARSESGAVPSFT--NVYVKNLPK 234
Query: 506 RISWQDLKDYMRQAGEVTYA----DAHKQHRNEGVVEFATHSDMRAAIEKLDGTEL 661
I+ +LK + G+++ A D R+ G V F + A+EK++G L
Sbjct: 235 EITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISL 290
Score = 35.9 bits (79), Expect = 0.025
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Frame = +2
Query: 119 FES*FIIVYWKMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFV 277
FE I + K+ GS +Y+ L V + L++ F +G + + G+GFV
Sbjct: 314 FEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFV 373
Query: 278 EFEDYRDADDAVYELNGKELLGER 349
+ + +A A+ E+NGK ++G +
Sbjct: 374 AYSNPEEALLAMKEMNGK-MIGRK 396
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Frame = +2
Query: 458 PPTRTEYR--LIVENLSSRISWQDLKDYMRQAGEVTYA----DAHKQHRNEGVVEFATHS 619
P TR + + ++NL + I + L + G + D + + G V+F
Sbjct: 124 PSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEE 183
Query: 620 DMRAAIEKLDGTELNGRRV 676
+AAI+KL+G LN ++V
Sbjct: 184 TAQAAIDKLNGMLLNDKQV 202
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
+++VGG+P V E +L+ FF +G + + + G+GFV F+ D+ + +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 320 LNGKELLGERVVV---EPARGIDRSADRY 397
N ++ +V + EP + ++RS Y
Sbjct: 170 GNMIDMADTQVEIKKAEPKKSLNRSPPSY 198
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 37.1 bits (82), Expect = 0.011
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Frame = +2
Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDA 310
+ S++ V LPF E L++ F FG I ++ LIK+ GY F++F DA A
Sbjct: 38 LASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLA 97
Query: 311 VYELNGKELLGERVVVEPAR 370
+ ++ + G + ++ A+
Sbjct: 98 IETMDRRMYNGRMIYIDIAK 117
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +2
Query: 479 RLIVENLSSRISWQDLKDYMRQAGEVTYA-----DAHKQHRNEGVVEFATHSDMRAAIEK 643
+++V NL S LK GE+ +A K+ + ++F + D AIE
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100
Query: 644 LDGTELNGRRV 676
+D NGR +
Sbjct: 101 MDRRMYNGRMI 111
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 37.1 bits (82), Expect = 0.011
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = +2
Query: 152 MVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADD 307
M + +YVGGL V E L F FG I+D+ +GFV F + DA
Sbjct: 10 MQKNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASA 69
Query: 308 AVYELNGKELLGERVVVEPA 367
A+ ++G EL G + V A
Sbjct: 70 AMDNMDGAELYGRVLTVNYA 89
Score = 35.1 bits (77), Expect = 0.044
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 569 AHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGR 670
A+++HR+ G V F D AA++ +DG EL GR
Sbjct: 49 ANQKHRSFGFVTFLEREDASAAMDNMDGAELYGR 82
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/68 (32%), Positives = 36/68 (52%)
Frame = +2
Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTEL 661
L+V NL S IS Q+L ++ GEV ++ +EF AA+ L+G E+
Sbjct: 304 LLVNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEV 363
Query: 662 NGRRVRLV 685
G++++LV
Sbjct: 364 AGKKLQLV 371
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +2
Query: 173 VGGLPFGVRERDLEKFFKGFGRIRDI---LIKNGYGFVEFEDYRDADDAVYELNGKELLG 343
V L + ++L + K +G +++I + N ++EF D R A A+ LNG E+ G
Sbjct: 306 VNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAG 365
Query: 344 ERVVVEP 364
+++ + P
Sbjct: 366 KKLQLVP 372
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 36.7 bits (81), Expect = 0.014
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVY 316
+ +Y+G LP + + L F FG I R + GYGFV++ D + A+ AV
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 317 ELNGKELLGERVVVEPA 367
+NG G + V A
Sbjct: 540 AMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 36.7 bits (81), Expect = 0.014
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVY 316
+ +Y+G LP + + L F FG I R + GYGFV++ D + A+ AV
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 317 ELNGKELLGERVVVEPA 367
+NG G + V A
Sbjct: 540 AMNGYRFEGRTLAVRIA 556
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 36.7 bits (81), Expect = 0.014
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNGKELL 340
+ V L V E +L+K F G + + I GYG+V+F+ A++AV + G +++
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQG-QVI 297
Query: 341 GERVV 355
G++ V
Sbjct: 298 GQQAV 302
Score = 30.3 bits (65), Expect = 1.3
Identities = 38/180 (21%), Positives = 73/180 (40%), Gaps = 8/180 (4%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYEL 322
+++G L + V E L F G + + +I+N GYGF+EF + A+ +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 323 NGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLS 502
NG ++ G + S + G H P T+Y L+ E
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAGPDH-------SIFVGDLAPDVTDY-LLQETF- 136
Query: 503 SRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVRL 682
R+ + ++ +V + + + G V+FA S+ A+ +++G + R +R+
Sbjct: 137 -RVHYSSVR-----GAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRI 190
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 36.7 bits (81), Expect = 0.014
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--KN-----GYGFVEFEDYRDADDAVYE 319
++++V + F +R+L + F FG+I+ + + KN GY FVEF ++A +A
Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKA 728
Query: 320 LNGKELLGERVVVEPARGIDRSADRYRR 403
L G +V+E A D S + R+
Sbjct: 729 LASTHFYGRHLVLEWAND-DNSMEAIRK 755
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 254 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVV 358
+ +GYGFVEF+ A +L G L G +++
Sbjct: 613 LSSGYGFVEFDSVETATSVYRDLQGTVLDGHALIL 647
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 36.7 bits (81), Expect = 0.014
Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 12/176 (6%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 319
+++VG +P E ++ +F+ G + ++ LIK+ G FV++ +DAD A+
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 499
L+ + L P G RY G+R E++L V +L
Sbjct: 181 LHNQITL-------PG-GTGPVQVRYADGERERIGTL--------------EFKLFVGSL 218
Query: 500 SSRISWQDLKDYMRQAGEVT----YADAHKQHRNEGVVEFATHSDMRAAIEKLDGT 655
+ + + +++++ Q G V D ++Q R G V++++ AAI+ L+GT
Sbjct: 219 NKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGT 274
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 36.7 bits (81), Expect = 0.014
Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 12/176 (6%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 319
+++VG +P E ++ +F+ G + ++ LIK+ G FV++ +DAD A+
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 499
L+ + L P G RY G+R E++L V +L
Sbjct: 181 LHNQITL-------PG-GTGPVQVRYADGERERIGTL--------------EFKLFVGSL 218
Query: 500 SSRISWQDLKDYMRQAGEVT----YADAHKQHRNEGVVEFATHSDMRAAIEKLDGT 655
+ + + +++++ Q G V D ++Q R G V++++ AAI+ L+GT
Sbjct: 219 NKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGT 274
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
+++VGGLP + + +F+ +G + D +I G+GFV F D D+ D V
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSF-DSEDSVDLVLH 169
Query: 320 LNGKELLGERVVVEPA 367
+L G++V V+ A
Sbjct: 170 KTFHDLNGKQVEVKRA 185
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFED 289
++++GG+ + E L ++F FG + + + G+GFV F D
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSD 56
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 36.7 bits (81), Expect = 0.014
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Frame = +2
Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRI-------RDILIKN--GYGFVEFEDYRDADD 307
VG+ +++G L V E+ L F FG I RD N G+GF+ ++ + +D
Sbjct: 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDA 169
Query: 308 AVYELNGKELLGERVVVEPARGIDRSADRY 397
A+ + G+ L ++ V A D +R+
Sbjct: 170 AIESMTGQYLSNRQITVSYAYKKDTKGERH 199
Score = 35.9 bits (79), Expect = 0.025
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYEL 322
VYVGGL + E L + F G + ++ + YGF+E+ DAD A+ L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 323 NGKELLGERVVVEPARGIDRSAD 391
N +L G+ + V A +S D
Sbjct: 87 NMIKLHGKPIRVNKASQDKKSLD 109
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 36.3 bits (80), Expect = 0.019
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 10/183 (5%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVY--ELNGKELL 340
++VGG+ V + DLE+ F FG+I D F DY + DDA+ +NGK +
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERK-TAFIDYYEMDDALQAKSMNGKPMG 310
Query: 341 GERVVVEPARGIDRSADRY------RRGDRH--XXXXXXXXXXXXXXPPTRTEYRLIVEN 496
G + V+ R +++ R G+ + P++ +
Sbjct: 311 GSFLRVDFLRSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWIGFPPT 370
Query: 497 LSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRV 676
+ Q L + M GE+ ++ RN +VEF + + R E L G N R+
Sbjct: 371 ATQCNDEQILHNAMILFGEIERVKSYPS-RNFALVEFRSAEEARQCKEGLQGRLFNNPRI 429
Query: 677 RLV 685
+++
Sbjct: 430 KIM 432
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAV 313
+ ++VG L E DL + F +G I I + + GF F YR ++AV
Sbjct: 18 NNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFA-FIYYRHVEEAV 67
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 36.3 bits (80), Expect = 0.019
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 9/181 (4%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI---KNG----YGFVEFEDYRDADDAVYE 319
+ VYV LP + E +L K F FG I ++ ++G +GFV FE A AV +
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 499
+NG L + + V A+ + RR L ++NL
Sbjct: 289 MNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGA---------NLYLKNL 339
Query: 500 SSRISWQDLKDYMRQAGEVTYADA--HKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRR 673
+ + LK+ + G VT + + Q + G F +S+ A+ L +E+NG+
Sbjct: 340 DDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRG-FGFVAYSNPEEALRAL--SEMNGKM 396
Query: 674 V 676
+
Sbjct: 397 I 397
Score = 32.7 bits (71), Expect = 0.23
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Frame = +2
Query: 119 FES*FIIVYWKMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFV 277
FE I + K G+ +Y+ L V + L++ F +G + + G+GFV
Sbjct: 318 FEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFV 377
Query: 278 EFEDYRDADDAVYELNGKELLGER 349
+ + +A A+ E+NGK ++G +
Sbjct: 378 AYSNPEEALRALSEMNGK-MIGRK 400
Score = 32.3 bits (70), Expect = 0.31
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYELN 325
+++ L + + L + F FG I + GYGFV+FE A A+ +LN
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 326 GKELLGERVVV 358
G + ++V V
Sbjct: 198 GMLMNDKQVFV 208
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Frame = +2
Query: 458 PPTRTEYR--LIVENLSSRISWQDLKDYMRQAGEVTYA----DAHKQHRNEGVVEFATHS 619
P TR + + ++NL + I + L + G + D + + G V+F
Sbjct: 128 PSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEE 187
Query: 620 DMRAAIEKLDGTELNGRRV 676
+AAI+KL+G +N ++V
Sbjct: 188 SAQAAIDKLNGMLMNDKQV 206
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 35.9 bits (79), Expect = 0.025
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRD----ILIKNG----YGFVEFEDYRDADDAV 313
G+ +YV LPF LE FK FG I + ++ + G YGFVEFE+ DA
Sbjct: 318 GTSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEE-ADAAHRA 376
Query: 314 YELNGKELLGERVVVE 361
E + ++ G R VE
Sbjct: 377 IEASPVKIGGLRAFVE 392
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 35.9 bits (79), Expect = 0.025
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIR--DILIKNG-------YGFVEFEDYRDADDAV-- 313
VYV LP + ++E+ FK FG I+ + ++ Y FVEFED ++A+
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 318
Query: 314 --YELNGKELLGERVVVEPA--RGIDRSADRYRRG 406
L G+++ E PA RG R R R G
Sbjct: 319 SPIYLGGRQVYIEERRPNPAGVRGARRGGGRGRGG 353
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 35.9 bits (79), Expect = 0.025
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIR--DILIKNG-------YGFVEFEDYRDADDAV-- 313
VYV LP + ++E+ FK FG I+ + ++ Y FVEFED ++A+
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 377
Query: 314 --YELNGKELLGERVVVEPA--RGIDRSADRYRRG 406
L G+++ E PA RG R R R G
Sbjct: 378 SPIYLGGRQVYIEERRPNPAGVRGARRGGGRGRGG 412
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 35.5 bits (78), Expect = 0.033
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 319
R++VGGLP+ E + + + FG ++ L+K+ GY F ++D D A
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Query: 320 LNGKELLGERVVVEPA 367
LNG ++ + + V A
Sbjct: 420 LNGIKMGDKTLTVRRA 435
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 35.5 bits (78), Expect = 0.033
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 319
R++VGGLP+ E + + + FG ++ L+K+ GY F ++D D A
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Query: 320 LNGKELLGERVVVEPA 367
LNG ++ + + V A
Sbjct: 420 LNGIKMGDKTLTVRRA 435
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 35.5 bits (78), Expect = 0.033
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 319
R++VGGLP+ E + + + FG ++ L+K+ GY F ++D D A
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Query: 320 LNGKELLGERVVVEPA 367
LNG ++ + + V A
Sbjct: 420 LNGIKMGDKTLTVRRA 435
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKG-FGRI--RDILI------KNGYGFVEFEDYRDADDAVYE 319
++V L F R + L++FF G + +++ +GYGFV F+ + A+ A+ E
Sbjct: 191 LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIE 250
Query: 320 LNGKELLGERV 352
GK+ LG +
Sbjct: 251 FQGKDFLGRPI 261
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 35.5 bits (78), Expect = 0.033
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI---KN-----GYGFVEFEDYRDADDAVY 316
++V+VGGL + ++ ++F+ FG I + +I KN GYGFV F + A AV
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Query: 317 ELN 325
+ N
Sbjct: 77 DPN 79
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 35.5 bits (78), Expect = 0.033
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI---KN-----GYGFVEFEDYRDADDAVY 316
++V+VGGL + ++ ++F+ FG I + +I KN GYGFV F + A AV
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Query: 317 ELN 325
+ N
Sbjct: 77 DPN 79
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +2
Query: 194 VRERDLEKFFKGFG---RIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 364
V L F+ +G ++R+ K FVEF D RDA A+ +NGK + G+ +V++
Sbjct: 194 VSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQF 253
Query: 365 AR 370
+R
Sbjct: 254 SR 255
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/71 (23%), Positives = 30/71 (42%)
Frame = +2
Query: 458 PPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAI 637
P + L++ NL +S L+ + GEV R + VEF D A+
Sbjct: 177 PEGNNQGSLVIMNLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKAL 236
Query: 638 EKLDGTELNGR 670
++G ++G+
Sbjct: 237 RVMNGKVISGK 247
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 35.5 bits (78), Expect = 0.033
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 319
R++VGGLP+ E + + + FG +R L+K+ GY F ++D D A
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
Query: 320 LNGKELLGERVVVEPA 367
LNG ++ + + V A
Sbjct: 436 LNGIKMGDKTLTVRRA 451
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVY 316
++V+VGGL + ++ ++F FG I + +I GYGFV F D A AV
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76
Query: 317 ELN 325
+ N
Sbjct: 77 DPN 79
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 34.7 bits (76), Expect = 0.058
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +2
Query: 470 TEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAH--KQHRNEGVVE--FATHSDMRAAI 637
T +L + NL + +D+K+ + GE+ H + R++G E ++ D AA+
Sbjct: 84 TGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAV 143
Query: 638 EKLDGTELNGRRVRL 682
+K + +L+G+ +++
Sbjct: 144 KKYNDVQLDGKPMKI 158
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 34.7 bits (76), Expect = 0.058
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +2
Query: 470 TEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAH--KQHRNEGVVE--FATHSDMRAAI 637
T +L + NL + +D+K+ + GE+ H + R++G E ++ D AA+
Sbjct: 20 TGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAV 79
Query: 638 EKLDGTELNGRRVRL 682
+K + +L+G+ +++
Sbjct: 80 KKYNDVQLDGKPMKI 94
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 34.7 bits (76), Expect = 0.058
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +2
Query: 470 TEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAH--KQHRNEGVVE--FATHSDMRAAI 637
T +L + NL + +D+K+ + GE+ H + R++G E ++ D AA+
Sbjct: 86 TGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAV 145
Query: 638 EKLDGTELNGRRVRL 682
+K + +L+G+ +++
Sbjct: 146 KKYNDVQLDGKPMKI 160
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 34.7 bits (76), Expect = 0.058
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 322
++V L + E +++ F+ +G I+ + + GY F+E+ RD A +
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 323 NGKELLGERVVVEPARG 373
+G+++ G RV+V+ RG
Sbjct: 200 DGQKIDGRRVLVDVERG 216
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 599 VEFATHSDMRAAIEKLDGTELNGRRV 676
+E+ DM+AA ++ DG +++GRRV
Sbjct: 184 IEYMHTRDMKAAYKQADGQKIDGRRV 209
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 34.7 bits (76), Expect = 0.058
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDY 292
++++VG L + DL ++F+ FG++ D + GYGF+ F DY
Sbjct: 12 TKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDY 63
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 34.7 bits (76), Expect = 0.058
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRI---RDILIK-----NGYGFVEFEDYRDADDAVY 316
+++YV GL F E L F+ FG + ++ K G+ F+ +E +A A+
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 317 ELNGKELLGERVVVEPAR 370
++GK L G + VE A+
Sbjct: 137 GMHGKFLDGRVIFVEEAK 154
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 34.7 bits (76), Expect = 0.058
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYEL 322
+++VG LP V E +++ F +G I+D+ I G F+++E A A+ L
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 323 NGKELLGERVVVEPARGIDRSADRYRR 403
NG+ ++ V + D +R R
Sbjct: 170 NGRHIMEGANVPLIVKWADTEKERQAR 196
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDIL--------IKNGYGFVEFEDYRDADDAV 313
G+ +++ +P +++L F+ FG++ I +GF+ ++ A +A+
Sbjct: 338 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 397
Query: 314 YELNGKELLGERVVVEPAR 370
+NG +L G+++ V+ R
Sbjct: 398 NTMNGCQLSGKKLKVQLKR 416
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 34.7 bits (76), Expect = 0.058
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYEL 322
+++VG LP V E +++ F +G I+D+ I G F+++E A A+ L
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 323 NGKELLGERVVVEPARGIDRSADRYRR 403
NG+ ++ V + D +R R
Sbjct: 161 NGRHIMEGANVPLIVKWADTEKERQAR 187
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDIL--------IKNGYGFVEFEDYRDADDAV 313
G+ +++ +P +++L F+ FG++ I +GF+ ++ A +A+
Sbjct: 329 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 388
Query: 314 YELNGKELLGERVVVEPAR 370
+NG +L G+++ V+ R
Sbjct: 389 NTMNGCQLSGKKLKVQLKR 407
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 34.3 bits (75), Expect = 0.077
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +2
Query: 194 VRERDLEKFFKGFGRIRDILI---KNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 364
V +L + F +G IR+I + + F+E+ D RDA+ A+ LN E+ G+ + +E
Sbjct: 281 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 340
Query: 365 AR 370
+R
Sbjct: 341 SR 342
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 34.3 bits (75), Expect = 0.077
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +2
Query: 194 VRERDLEKFFKGFGRIRDILI---KNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 364
V +L + F +G IR+I + + F+E+ D RDA+ A+ LN E+ G+ + +E
Sbjct: 294 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 353
Query: 365 AR 370
+R
Sbjct: 354 SR 355
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 34.3 bits (75), Expect = 0.077
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI-KN-------GYGFVEFEDYRDADDAVYE 319
++ + LPF + D++ F G + D+ I KN G+ FV+F +DA +A+ +
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKK 391
Query: 320 LNGKELLGERVV 355
NG + G+R +
Sbjct: 392 FNG-HMFGKRPI 402
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 578 QHRNEGVVEFATHSDMRAAIEKLDGTELNGRRV 676
+HR V+FA D+ AIE +G+ + GRR+
Sbjct: 59 EHRGFAFVKFALQEDVNRAIELKNGSTVGGRRI 91
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIR--DILIKNG-----YGFVEFE 286
G +YV LPF LE+ FK FG I+ I +++ +GFVEFE
Sbjct: 292 GHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQGFCFGFVEFE 341
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI---KNGY----GFVEFEDYRDADDAVYELN 325
+YV LP + D+ FFK G++ + + +NG GFVEF +A A+ N
Sbjct: 566 LYVCCLPRDTKMPDIIDFFKDVGQVVSVQLTTKRNGLRLSTGFVEFASANEAKKALDMKN 625
Query: 326 GKELLGERVVV 358
G+ L G ++++
Sbjct: 626 GEYLCGNKLIL 636
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI---KN-----GYGFVEFEDYRDADDAVY 316
++++VGGL + + + ++F+ FG I + ++ KN GYGFV F++ A A
Sbjct: 22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81
Query: 317 ELN 325
+N
Sbjct: 82 NMN 84
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 33.9 bits (74), Expect = 0.10
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYELN 325
V+V LP V L+ FK FG I + GYGFV+FE A A+ LN
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 326 GKELLGERVVV 358
+ + + V
Sbjct: 174 STIVADKEIYV 184
Score = 32.7 bits (71), Expect = 0.23
Identities = 37/181 (20%), Positives = 72/181 (39%), Gaps = 11/181 (6%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN-------GYGFVEFEDYRDADDAVYE 319
+ +Y+ L V E L + F FG+I + I GY FV F++ DA A
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260
Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 499
+NG + + + V A+ ++ +R + V+N+
Sbjct: 261 VNGTKFGSKCLYVGRAQ---------KKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNV 311
Query: 500 SSRISWQDLKDYMRQAGEVT----YADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNG 667
+ ++ ++L+ + Q G +T D + + G V F+T + A++ G +G
Sbjct: 312 NVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHG 371
Query: 668 R 670
+
Sbjct: 372 K 372
Score = 31.5 bits (68), Expect = 0.54
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYE 319
S +YV + V E +L K F G I + G+GFV F +A DAV
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363
Query: 320 LNGKELLGERVVVEPAR 370
+G+ G+ + V A+
Sbjct: 364 FHGQMFHGKPLYVAIAQ 380
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +2
Query: 467 RTEYRLIVENLSSRISWQDLKDYMRQAGEVTYA-----DAHKQHRNEGVVEFATHSDMRA 631
R E+ + V +L S +DLK GEVT K+ + + FAT +
Sbjct: 211 RKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKR 270
Query: 632 AIEKLDGTELNGRR 673
A+++L +NG++
Sbjct: 271 AVKELKSPMINGKK 284
>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 536
Score = 33.5 bits (73), Expect = 0.13
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +2
Query: 200 ERDLEKFFKGFGRIRDILI----KNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPA 367
E D+ +F +G + D+ I K YGFV F + + N + RV+V+P
Sbjct: 331 EHDVSIYFTSYGHVEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLVKPY 390
Query: 368 RGIDRSADRY 397
R RS+ RY
Sbjct: 391 REKSRSS-RY 399
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIR--DILIKNG------YGFVEFE 286
G +YV LPF LE+ FK FG I+ I +++ +GFVEFE
Sbjct: 292 GHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFE 342
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 33.1 bits (72), Expect = 0.18
Identities = 37/178 (20%), Positives = 70/178 (39%), Gaps = 6/178 (3%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI------KNGYGFVEFEDYRDADDAVYEL 322
+ +YV L + LE+ F FG I + G+GFV+F+ + A A L
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 323 NGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLS 502
+G + G+++ V A+ I++ G++ T + ++E ++
Sbjct: 172 HGSMVYGKKLFV--AKFINKDERAAMAGNQ---------------DSTNVYVKNLIETVT 214
Query: 503 SRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRV 676
Y + V D + R G V F + + A+E L G +L +++
Sbjct: 215 DDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKL 272
Score = 32.3 bits (70), Expect = 0.31
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYE 319
S +YV L + E L + F +G+I + G+GFV F + ++ A
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRY 363
Query: 320 LNGKELLGERVVVEPARGIDRSADRYRR 403
LNG + G+ +VV A +R DR +R
Sbjct: 364 LNGFLVDGKPIVVRVA---ERKEDRIKR 388
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 310
++V+VGGL + + ++K F+ FG I + ++ GYGFV F + A A
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 310
++V+VGGL + + ++K F+ FG I + ++ GYGFV F + A A
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 310
++V+VGGL + + ++K F+ FG I + ++ GYGFV F + A A
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 33.1 bits (72), Expect = 0.18
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 14/92 (15%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEF--EDYRD---AD 304
+++VGGLP + E +L+ +F +G I + I G+GFV F ED D +D
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
Query: 305 DAVYELNGKELLGERVVVEPAR-GIDRSADRY 397
V+EL K++ +R EP R G D S Y
Sbjct: 218 GKVHELGDKQVEIKR--AEPKRTGRDNSFRSY 247
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 322
V V L RE DL + F FG + + + G+GFV F DA A+ +L
Sbjct: 215 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 274
Query: 323 NG 328
NG
Sbjct: 275 NG 276
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVY 316
S +YV L F + D+ F FG++ + + G FV + DA A
Sbjct: 57 STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116
Query: 317 ELNGKELLGERVVVEPARGIDRSAD 391
++ K L G ++ V A R+++
Sbjct: 117 SMDAKILNGRKLTVSIAADNGRASE 141
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +2
Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYAD-----AHKQHRNEGVVEFATHSDMRAAIEKL 646
L V++LS ++ LK+ GEV + + A R G VEF +D A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 647 DGTELNGRRVR 679
DG +++G+ V+
Sbjct: 160 DGAQIDGKVVK 170
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVYEL 322
++V L V E L++ F FG + R + + G+G+VEF+ DA+ A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 323 NGKELLGERV 352
+G ++ G+ V
Sbjct: 160 DGAQIDGKVV 169
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +2
Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYAD-----AHKQHRNEGVVEFATHSDMRAAIEKL 646
L V++LS ++ LK+ GEV + + A R G VEF +D A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 647 DGTELNGRRVR 679
DG +++G+ V+
Sbjct: 160 DGAQIDGKVVK 170
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVYEL 322
++V L V E L++ F FG + R + + G+G+VEF+ DA+ A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 323 NGKELLGERV 352
+G ++ G+ V
Sbjct: 160 DGAQIDGKVV 169
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 32.7 bits (71), Expect = 0.23
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNG----YGFVEFEDYRDADDAVYE 319
+VYVG LP+ + L F FG I + K G + F+ F + DA
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEER-DAALS 271
Query: 320 LNGKELLGERVVVEPARGIDRS 385
NG + G R++V GI++S
Sbjct: 272 FNGTQYEGRRIIVR--EGIEKS 291
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 31.9 bits (69), Expect = 0.41
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDIL--------IKNGYGFVEFEDYRDADDAV 313
G+ +YV GL V ++DLE F G++ + G+ FV +DA+ +
Sbjct: 71 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 130
Query: 314 YELNGKELLG 343
LN L G
Sbjct: 131 KYLNQSVLEG 140
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 31.9 bits (69), Expect = 0.41
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Frame = +2
Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDIL--------IKNGYGFVEFEDYRDADDAV 313
G+ +YV GL V ++DLE F G++ + G+ FV +DA+ +
Sbjct: 70 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 129
Query: 314 YELNGKELLG 343
LN L G
Sbjct: 130 KYLNQSVLEG 139
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 254 IKNGYGFVEFEDYRDADDAVYELNG 328
+ GYGFVEFE + AD + E NG
Sbjct: 142 LSEGYGFVEFESHDVADKVLREFNG 166
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPA 367
GYGFV F D + A+ E+NG + + + PA
Sbjct: 240 GYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPA 274
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
+++VGG+P V E +L+ FF +G + + + G+GFV F+ D+ + +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 320 LN 325
N
Sbjct: 170 GN 171
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 31.5 bits (68), Expect = 0.54
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRD--ILIKNGYGFVEFEDYRDADDAVYELNGKELL 340
+YVGGL V E+D+ F G I IL + FV + A+ A EL+ + ++
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLVV 289
Query: 341 -GERV 352
G+R+
Sbjct: 290 NGQRL 294
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 31.5 bits (68), Expect = 0.54
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN------GYGFVEFEDYRDADDAVYELN 325
++V L ++ D+ FFK G + + LI N G+GFVEF +A+ A+ + N
Sbjct: 249 LFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQGKHAGWGFVEFASANEAEKALVK-N 307
Query: 326 GKELLGERVVVEPAR 370
G+ L ++ ++ A+
Sbjct: 308 GEYLHNYKISLDGAK 322
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Frame = +2
Query: 209 LEKFFKGFGRIRDI-LIKN------GYGFVEFEDYRDADDAVYELNGKELLGERVVV 358
++ FF G ++ + L+ N GYGFVEF A+ A+ E NG+ L ++++
Sbjct: 174 IKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKNGEYLHNHKILL 230
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 31.5 bits (68), Expect = 0.54
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRD--ILIKNGYGFVEFEDYRDADDAVYELNGKELL 340
+YVGGL + E+D+ F G I IL FV + A+ A EL+ + ++
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLVI 289
Query: 341 -GERV 352
G+R+
Sbjct: 290 NGQRL 294
>At1g47370.1 68414.m05244 Toll-Interleukin-Resistance (TIR)
domain-containing protein domain signature TIR exists,
suggestive of a disease resistance protein.
Length = 363
Score = 31.1 bits (67), Expect = 0.72
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 175 WWSPLWSKRERLGKVLQRFWKNQRHTYQE 261
WW+ + R R+GKVL FW+ + +++
Sbjct: 327 WWNQTKTTRARIGKVLIHFWEKLKKKFKD 355
>At1g05510.1 68414.m00563 expressed protein
Length = 241
Score = 31.1 bits (67), Expect = 0.72
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +2
Query: 146 WKMVGSRVYVGGLPFGVRERDLEKFFKGFGRI 241
W++ G +++ G+P ++ +DLEK K +G++
Sbjct: 117 WEVKGGFLFMPGVPEAIQRQDLEKVAKTYGKV 148
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 30.7 bits (66), Expect = 0.95
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFK---GFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL 337
+++ LP L+ F+ GF IR I K G FVE+ED A A+ L G ++
Sbjct: 160 LFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKI 219
Query: 338 LGERVVV 358
+ +V
Sbjct: 220 TPQNPMV 226
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 30.7 bits (66), Expect = 0.95
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
+++V GLP+ L F+G+G I + + G+GFV F+ + A +A+ E
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 30.7 bits (66), Expect = 0.95
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Frame = +2
Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
+++V GLP+ L F+G+G I + + G+GFV F+ + A +A+ E
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 30.7 bits (66), Expect = 0.95
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +2
Query: 200 ERDLEKFFKGFGRI--RDIL--IKNG----YGFVEFEDYRDADDAVYELNGKELLGERVV 355
+ DL F FG + D++ K G Y F+EFE+ + A ++++ + R+
Sbjct: 256 DEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRRIH 315
Query: 356 VEPARGIDRSADRYRRGD 409
V+ ++ + + ++R+ D
Sbjct: 316 VDFSQSVSKLWSQFRQKD 333
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 30.7 bits (66), Expect = 0.95
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFK---GFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL 337
+++ LP L+ F+ GF IR I K G FVE+ED + A+ L G ++
Sbjct: 156 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKI 215
Query: 338 LGERVVV 358
+ +V
Sbjct: 216 TPQNPMV 222
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 30.7 bits (66), Expect = 0.95
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFK---GFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL 337
+++ LP L+ F+ GF IR I K G FVE+ED + A+ L G ++
Sbjct: 157 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKI 216
Query: 338 LGERVVV 358
+ +V
Sbjct: 217 TPQNPMV 223
>At2g31985.1 68415.m03909 expressed protein
Length = 241
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = +2
Query: 146 WKMVGSRVYVGGLPFGVRERDLEKFFKGFGRI 241
W++ G +++ G+P ++ +DL+K K +G++
Sbjct: 117 WEVKGGFLFMPGVPGAIQRKDLDKVAKTYGKV 148
>At1g79975.2 68414.m09353 expressed protein
Length = 152
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 91 KIVDYLLVQL*IIVYYCLLENGWITSVCWW 180
K +D+ I +++C++ GW +S+ WW
Sbjct: 88 KCLDFSATLYIIHLFFCIMYGGWPSSMAWW 117
>At1g79975.1 68414.m09352 expressed protein
Length = 152
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 91 KIVDYLLVQL*IIVYYCLLENGWITSVCWW 180
K +D+ I +++C++ GW +S+ WW
Sbjct: 88 KCLDFSATLYIIHLFFCIMYGGWPSSMAWW 117
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGY 268
+R+Y+ LP V +L+ F G G++ I K GY
Sbjct: 280 ARIYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGY 315
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGY 268
+R+Y+ LP V +L+ F G G++ I K GY
Sbjct: 280 ARIYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGY 315
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVY 316
+ ++V GL L F FG + D + G+GFV + D+ +
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 317 ELNGKELLGERVVVEPARGIDRS 385
++GK L G + E AR ++S
Sbjct: 116 GMDGKFLDGWVIFAEYARPREQS 138
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Frame = +2
Query: 458 PPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQH-----RNEGVVEFATHSD 622
P L V LS R + + L+ Q GEV A + G V +AT D
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLED 109
Query: 623 MRAAIEKLDGTELNG 667
I +DG L+G
Sbjct: 110 SAKGIAGMDGKFLDG 124
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 310
+++YV GLP+ R L +F+ FG I + G+GFV F + A A
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +2
Query: 458 PPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGV----VEFATHSDM 625
P E L V NLS + D+ + + GEV H ++ V VEF + ++
Sbjct: 121 PADFAEEVLFVANLSPQTKILDIFGFCQDVGEVVSVRLIANHEDKPVGCAFVEFLSANEA 180
Query: 626 RAAIEKLDGTELNGRRVRLV 685
+ +E +G +G ++ L+
Sbjct: 181 KKVLENKNGEYFHGHKIILM 200
>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
spliceosomal protein U1A / U1snRNP-specific protein
identical to GB:Z49991 U1snRNP-specific protein
[Arabidopsis thaliana]
Length = 250
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFF---KGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL 337
++V LP L+ F +GF +R I K G FVEF D + A+ L G ++
Sbjct: 179 LFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKI 238
Query: 338 LGERVVVEPAR 370
++++ A+
Sbjct: 239 QQNQMLITYAK 249
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYEL 322
++VG L E L + +GRI+++ L+++ GYGFVE+E ++ A +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 323 NGKELLGERVVVE 361
+ + G ++V+
Sbjct: 126 HHSLIDGREIIVD 138
>At5g45520.1 68418.m05591 hypothetical protein
Length = 1167
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 647 PVSQWRPACPSASQILPHLHSCVVYGRQRKSLRQL 543
PV R PS+ ++ PH+HS V+Y + L +L
Sbjct: 286 PVEDERKLLPSSYKMEPHVHSAVIYLAKEMDLFEL 320
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVYEL 322
V V L R DL + F+ FG + + + G+GFV F DA A+ +L
Sbjct: 176 VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKL 235
Query: 323 NG 328
NG
Sbjct: 236 NG 237
>At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing
protein
Length = 313
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = +2
Query: 152 MVGSRVYVGGLPFGVRERDLEKFFKGFGRI-----RDILIKNGYGFVEFEDYRDADDAVY 316
M + V V + G +RDL++FF G I + + +V F+D + A+ AV
Sbjct: 1 MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVL 60
Query: 317 ELNGKELLGERVVVEPA 367
L+G ++ V+V A
Sbjct: 61 -LSGATIVDSSVIVSMA 76
>At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to SP|P52597
Heterogeneous nuclear ribonucleoprotein F (hnRNP F)
{Homo sapiens}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 350
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = +2
Query: 179 GLPFGVRERDLEKFFKGFGRIRDI--LIKNGYG------FVEFEDYRDADDAVYELNGKE 334
GLPF + D+ FFK F D + NG G FVEF + D+ A+ + ++
Sbjct: 268 GLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPTGEAFVEFRNAEDSRAAM--VKDRK 325
Query: 335 LLGERVVVEPARGIDRSADRYRRG 406
LG R + ++ + RG
Sbjct: 326 TLGSRYIELFPSSVEELEEALSRG 349
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Frame = +2
Query: 209 LEKFFKGFGRIRDILIKNGY--------GFVEFEDYRDADDAVYELNGKELLGERVVVEP 364
LEK F G IR + + Y F+ E A+D +L+G +++G V+V+P
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEG-EGAEDKALQLSGTDVVGWTVIVKP 191
Query: 365 A 367
+
Sbjct: 192 S 192
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKG-------FGRIRDILIKNGYGFVEFED 289
+RVY+G L + ERD+ K F G+ ++ GY V+F+D
Sbjct: 262 NRVYIGNLAWDTTERDIRKLFSDCVINSVRLGKNKETGEFKGYAHVDFKD 311
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 152 MVGSRVYVGGLPFGVRERDLEKFFKGFGRI 241
+V +++YVGG+P+ E ++ +F+ G I
Sbjct: 158 VVPNKLYVGGIPYQSTEDEIRSYFRSCGVI 187
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Frame = +2
Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDA----D 304
++V+VGGL + + + F +G I + +I GYGFV F+D + A +
Sbjct: 17 TKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACE 76
Query: 305 DAVYELNGK 331
D+ +NG+
Sbjct: 77 DSTPIINGR 85
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Frame = +2
Query: 170 YVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVYELN 325
+V GL E+DL F FG + RD +GFV FE+ + DA+ ++
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Query: 326 GKE 334
+E
Sbjct: 70 VEE 72
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Frame = +2
Query: 458 PPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNE-----GVVEFATHSD 622
P Y L+V N++ R + DL + G+V + R V + +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 623 MRAAIEKLDGTELNGRRV 676
A+E+LDG ++GR +
Sbjct: 70 AHKAVERLDGRVVDGREI 87
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Frame = +2
Query: 458 PPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNE-----GVVEFATHSD 622
P Y L+V N++ R + DL + G+V + R V + +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 623 MRAAIEKLDGTELNGRRV 676
A+E+LDG ++GR +
Sbjct: 70 AHKAVERLDGRVVDGREI 87
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIR--DILIKN----GYGFVEFEDYRDADDAV 313
+ V LP +E FK FG IR + ++N YGFVEF++ A A+
Sbjct: 1078 ICVKNLPLNATIALVENAFKQFGEIRRGGVEVRNKRSFSYGFVEFKEENAAQRAI 1132
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPA---RGIDRSADRYR 400
GYGFV F D + A+ E+NG + + PA +G+ D Y+
Sbjct: 198 GYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQ 246
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKN 262
V+VG LP V+++ + K F FG + + I++
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRS 204
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 584 RNEGVVEFATHSDMRAAIEKLDGTELNGRRVRL 682
R G V F + +AI+ LDG +L+GR V++
Sbjct: 81 RGFGFVTFTSSEAASSAIQALDGRDLHGRVVKV 113
>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 986
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 147 GKWLDHECMLVVSPLE*ERETW 212
GKW D E +L++ LE +E W
Sbjct: 365 GKWTDQETLLLLEALEIFKENW 386
>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 983
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 147 GKWLDHECMLVVSPLE*ERETW 212
GKW D E +L++ LE +E W
Sbjct: 365 GKWTDQETLLLLEALEIFKENW 386
>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 147 GKWLDHECMLVVSPLE*ERETW 212
GKW D E +L++ LE +E W
Sbjct: 365 GKWTDQETLLLLEALEIFKENW 386
>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 147 GKWLDHECMLVVSPLE*ERETW 212
GKW D E +L++ LE +E W
Sbjct: 365 GKWTDQETLLLLEALEIFKENW 386
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVV 355
GYGFV F + D A+ E+NGK +G R +
Sbjct: 179 GYGFVSFLNPADLAAALKEMNGK-YVGNRPI 208
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,173,766
Number of Sequences: 28952
Number of extensions: 249850
Number of successful extensions: 1217
Number of sequences better than 10.0: 211
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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