Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a10
         (283 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    26   1.2  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    25   2.7  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    24   3.6  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    23   6.3  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    23   6.3  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    23   6.3  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    23   6.3  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    23   8.3  

>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 13  QEKLYCNIESFFSNEFDKFLSH 78
           +EK    +  FF NEF +FL H
Sbjct: 377 EEKSTFTLRQFFHNEFPRFLPH 398


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 211 KKKNICVHHAFVTITKFSILQITVIISVQFHKTTNY 104
           KK+N+ +H  F+ +   ++  I VI +  F K T+Y
Sbjct: 224 KKRNLNMHGVFLHVLGDALGNIGVISAALFIKYTDY 259


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 266 KQYLFIKNIN*SVASIN*KKKKHLCPSRIRY 174
           K YLF+ NI+   AS++     H+  ++I Y
Sbjct: 236 KDYLFVSNIDNLGASVDLNILSHVIDNQIEY 266


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 220 ILATDQLIFLINKYC 264
           +LAT+ ++FL++ YC
Sbjct: 365 MLATEPIVFLVSLYC 379


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 185 VMDTNVFFFFNLYLLQI 235
           ++DTN+ FF+ + L Q+
Sbjct: 92  ILDTNIDFFYEIMLRQV 108


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 28  CNIESFFSNEFDK 66
           C IE  FS EFDK
Sbjct: 418 CGIEGAFSEEFDK 430


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -3

Query: 80  LWDK--NLSNSFEKKLSMLQY 24
           +W+K   L N FEKKLS L +
Sbjct: 57  VWEKPEELMNDFEKKLSKLAW 77


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = -1

Query: 118 KTTNYKRLNPNRFCGIKICQI 56
           K    K ++P+ FC +++C +
Sbjct: 429 KNLEAKTVSPSNFCALEVCAL 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,010,319
Number of Sequences: 5004
Number of extensions: 15649
Number of successful extensions: 33
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)