Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a10
         (283 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0624 - 18115559-18115725,18115993-18116872                       28   0.97 
04_04_1537 - 34235360-34235486,34236107-34236234,34236344-342364...    26   5.2  
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123...    25   6.8  
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873...    25   6.8  

>04_03_0624 - 18115559-18115725,18115993-18116872
          Length = 348

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 109 NYKRLNPNRFCGIKICQIHLKKNFQCYNTAF 17
           NY  LN     GI  CQ+++ K  Q Y  +F
Sbjct: 154 NYSSLNDGDCFGIGCCQMNIPKGLQYYQISF 184


>04_04_1537 -
           34235360-34235486,34236107-34236234,34236344-34236483,
           34236967-34237023,34237358-34237475,34237585-34237734,
           34237857-34237941,34238040-34238104,34238351-34238500,
           34238835-34238910,34239071-34239150
          Length = 391

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -1

Query: 217 IKKKKNICVHHAFVT---ITKFSILQITVIISVQFHKTTNY 104
           I K+KNIC+H        I  FS  + T +I + +H+  +Y
Sbjct: 92  ILKRKNICIHMLNSPRWYIRNFSDREATSMIHLSYHQGEHY 132


>01_06_0847 +
           32411521-32411619,32411737-32411851,32412292-32412375,
           32412430-32413478,32414690-32416371,32416477-32416586,
           32417634-32418430,32418839-32418951,32419147-32419194,
           32419425-32419652,32419732-32419829,32419967-32420019
          Length = 1491

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -1

Query: 226 QV*IKKKKNICVHHAFVTITKFSILQITVIISVQFHKTTNYKRLN 92
           QV +++KK            K  +L++  +++++ HK+  YKRL+
Sbjct: 167 QVLVEEKKKSNSEKKNAEEEKGKVLELQRLLNMETHKSEEYKRLS 211


>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
            23187887-23188159,23188275-23188338,23188479-23188744,
            23188951-23189045,23189544-23189718,23190669-23191063,
            23191830-23191953,23192864-23192959,23193049-23193120,
            23194687-23194824,23195369-23195549,23195602-23195963,
            23196944-23197386,23197461-23197763,23197857-23198081,
            23198260-23198350,23198702-23198779,23198939-23199229,
            23199316-23199513,23199681-23200163,23200488-23200562,
            23201163-23201324,23201400-23201729,23201816-23201916,
            23202477-23202581,23202931-23203162,23203913-23204257,
            23204346-23204447,23206010-23206153,23206463-23206551,
            23206979-23207061,23207172-23207287,23207824-23207909,
            23208461-23208560,23209270-23209335
          Length = 2451

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -1

Query: 202  NICVHHAFVTITKFSILQITVIISVQFHKTTNYKRLNPNRFCGIKICQIHLKKNFQCYNT 23
            ++C+ +  +T+ + +IL IT   + Q    T Y      R C    C+ H   N+  YN 
Sbjct: 2133 DLCLGYGAMTVLENTILTITQSPTYQGSAMTQYMNAILTRIC--NYCETHRHFNY-LYN- 2188

Query: 22   AFLV 11
             FLV
Sbjct: 2189 -FLV 2191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,283,976
Number of Sequences: 37544
Number of extensions: 70460
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)