Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a10
         (283 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31612| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.8e-12)         31   0.14 
SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)                 29   0.58 
SB_52989| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.76 
SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)                     29   0.76 
SB_16977| Best HMM Match : Involucrin (HMM E-Value=0.012)              29   0.76 
SB_3388| Best HMM Match : Involucrin (HMM E-Value=4.9)                 29   0.76 
SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.76 
SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)                   29   0.76 
SB_2192| Best HMM Match : rve (HMM E-Value=4e-23)                      29   0.76 
SB_57926| Best HMM Match : I-set (HMM E-Value=3.5e-39)                 27   3.1  
SB_41461| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   4.1  
SB_33392| Best HMM Match : zf-CCHC (HMM E-Value=0.043)                 25   7.1  
SB_10842| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_54602| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  
SB_1458| Best HMM Match : PAN (HMM E-Value=0.0066)                     25   9.4  

>SB_31612| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.8e-12)
          Length = 398

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 178 VTITKFSILQITVIISVQFHKTTNYKRLNPNRF 80
           +TIT  +I+ IT+II+  +H TT     N N F
Sbjct: 70  ITITVITIITITIIINYDYHHTTIITNHNNNGF 102


>SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)
          Length = 2253

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -1

Query: 172  ITKFSILQITVIISVQFHKTTNYKRLNPNRFCGIKICQIHLKKNFQCYNTAF 17
            I KF++  I   +++Q HK+    +L+PN   G KI +I    N+    T F
Sbjct: 1960 IFKFNVYDI---VAIQIHKSDKVSKLHPNMLIG-KITEIDSTSNYVKVVTQF 2007


>SB_52989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 139 IISVQFHKTTNYKRLNPNRFCGIKICQIHLKKNFQCYNTAF 17
           I+++Q HK+    +L+PN   G KI +I    N+    T F
Sbjct: 39  IVAIQIHKSDKVSKLHPNMLIG-KITEIDSTSNYVKVVTQF 78


>SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)
          Length = 622

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 139 IISVQFHKTTNYKRLNPNRFCGIKICQIHLKKNFQCYNTAF 17
           I+++Q HK+    +L+PN   G KI +I    N+    T F
Sbjct: 544 IVAIQIHKSDKVSKLHPNMLIG-KITEIDSTSNYVKVVTQF 583


>SB_16977| Best HMM Match : Involucrin (HMM E-Value=0.012)
          Length = 247

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 139 IISVQFHKTTNYKRLNPNRFCGIKICQIHLKKNFQCYNTAF 17
           I+++Q HK+    +L+PN   G KI +I    N+    T F
Sbjct: 169 IVAIQIHKSDKVSKLHPNMLIG-KITEIDSTSNYVKVVTQF 208


>SB_3388| Best HMM Match : Involucrin (HMM E-Value=4.9)
          Length = 174

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 139 IISVQFHKTTNYKRLNPNRFCGIKICQIHLKKNFQCYNTAF 17
           I+++Q HK+    +L+PN   G KI +I    N+    T F
Sbjct: 96  IVAIQIHKSDKVSKLHPNMLIG-KITEIDSTSNYVKVVTQF 135


>SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 190 HHAFVTITKFSILQITVIISVQFHKTTNYKRLNP-NRFCGIKICQIHLKKNFQC 32
           H  F  I +F++ ++   +   + K+   +      RF G+K   IH +K+  C
Sbjct: 752 HRDFAWIAEFALGELNNRVQASYRKSGGLQGYGKCQRFIGVKYANIHQRKDTDC 805


>SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)
          Length = 1068

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 139 IISVQFHKTTNYKRLNPNRFCGIKICQIHLKKNFQCYNTAF 17
           I+++Q HK+    +L+PN   G KI +I    N+    T F
Sbjct: 594 IVAIQIHKSDKVSKLHPNMLIG-KITEIDSTSNYVKVVTQF 633


>SB_2192| Best HMM Match : rve (HMM E-Value=4e-23)
          Length = 491

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 139 IISVQFHKTTNYKRLNPNRFCGIKICQIHLKKNFQCYNTAF 17
           I+++Q HK+    +L+PN   G KI +I    N+    T F
Sbjct: 413 IVAIQIHKSDKVSKLHPNMLIG-KITEIDSTSNYVKVVTQF 452


>SB_57926| Best HMM Match : I-set (HMM E-Value=3.5e-39)
          Length = 788

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 17  KSCIVTLKVFFQMNLTNFYPTKTVGIKAFVVS 112
           K+    LKV  Q N+T   P +T+ IK + ++
Sbjct: 406 KNASAELKVLAQTNITTPLPPRTIAIKGYSIT 437


>SB_41461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 433

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 109 NYKRLNPNRFCGIKICQIHLKKNFQC 32
           ++ RLNP   C +K C    ++N +C
Sbjct: 358 DFDRLNPKNPCSVKACVNFDEENMEC 383


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 139  IISVQFHKTTNYKRLNPNRFCGIKICQI 56
            I+++Q HK+    +L+PN   G KI +I
Sbjct: 1143 IVAIQIHKSDKVSKLHPNMLIG-KITEI 1169


>SB_33392| Best HMM Match : zf-CCHC (HMM E-Value=0.043)
          Length = 348

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 14  KKSCIVTLKVFFQMNLTNFYPTKTVGIKAFVVSC 115
           ++S I ++     +NLT FY  +T+G++A   +C
Sbjct: 202 RESQICSVSFVQPVNLTKFYEFETLGVQANDCAC 235


>SB_10842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 1   FMN*QEKLYCNIESFFSNEFDKFLSH 78
           F+  +E    NIE+FF  +F  F+SH
Sbjct: 148 FIKVEETKVFNIETFFYKKFAHFVSH 173


>SB_54602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 187 HAFVTITKFSILQITVIISVQFHKTTNYKRLN 92
           H FVT+T  + +++ + ++       NYK +N
Sbjct: 151 HLFVTMTNLNPVKLVLFLNNHMELVENYKAVN 182


>SB_1458| Best HMM Match : PAN (HMM E-Value=0.0066)
          Length = 403

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = -1

Query: 283 FFFSFKNNIYLLKISIDL*QV*IKKKKNICVHHAFVTITKFSILQITVIISVQFHKTTNY 104
           F ++  N   + ++   + QV  K KKN+C+++         I+  T+++S   H  + Y
Sbjct: 60  FQYTNNNETTVFQVQAQVRQVGPKFKKNVCLYYRMFLAR--VIVMATILLSRSKHVISQY 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,788,927
Number of Sequences: 59808
Number of extensions: 99735
Number of successful extensions: 175
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 290602631
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)