Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a09
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0651 + 4711369-4712431,4713069-4713763                           28   5.4  
02_01_0151 + 1067067-1067222,1067586-1067690,1067904-1067990,106...    28   7.1  
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570...    27   9.4  

>06_01_0651 + 4711369-4712431,4713069-4713763
          Length = 585

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +1

Query: 466 GRPVSGQLKKFVFRARSSTNGDTRGEYLEIVI---PELLSAGYSFYTWPSAP 612
           G PV+GQ      +AR   N DT        +   PELL++G S  T+   P
Sbjct: 440 GAPVAGQSNVLTAQARGDPNEDTGFSVHNCTVVASPELLASGVSTRTFLGRP 491


>02_01_0151 +
           1067067-1067222,1067586-1067690,1067904-1067990,
           1068071-1068121,1068265-1068291,1068292-1068385,
           1068610-1068845
          Length = 251

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 547 LEIVIPELLSAGYSFYTWPSAPLLAWYLW 633
           L + I E +   Y  + WP + +LA Y+W
Sbjct: 46  LRVDIIENIEEDYGMFVWPCSVILAEYVW 74


>03_02_0719 +
           10654842-10654977,10655039-10655124,10655226-10657001,
           10657782-10657926,10658017-10658735
          Length = 953

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 152 KPLDVAFQNLPKSPPKKFQ*KT 217
           KPLD+  Q +P SP ++FQ +T
Sbjct: 171 KPLDLRAQKMPSSPIERFQIET 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,291,535
Number of Sequences: 37544
Number of extensions: 276952
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)