Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a07
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    23   2.6  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   6.0  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 202 APSTGGVKKPHRYRPGTVALREI 270
           AP+T G+  P    PG +   EI
Sbjct: 265 APATTGIAGPFTQSPGVLGFNEI 287


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = +1

Query: 124 TKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLI 303
           T+ + R S+G ++PR +   K   K    T   K+P     G    R    + ++  L  
Sbjct: 197 TRYSDRPSSG-RSPRTRRVKKPGAKQGAPTAEEKRPRTAFSGAQLARLKHEFAENRYLTE 255

Query: 304 RK 309
           R+
Sbjct: 256 RR 257


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,393
Number of Sequences: 336
Number of extensions: 3365
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)