Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a07
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    27   0.14 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   7.1  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   7.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   7.1  

>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 698 MKYIILILHCSIPLLE*KKSVLPPYDVMDII 606
           MK+I+L+L C++  +   ++ L P D MD I
Sbjct: 1   MKFIVLVLFCAVAYVS-AQAELEPEDTMDYI 30


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 441 LVCYSRQTCDHHAEGYSTCSTNP 509
           L+   R + D     +STCS++P
Sbjct: 102 LMAILRMSADGGCRNFSTCSSHP 124


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 441 LVCYSRQTCDHHAEGYSTCSTNP 509
           L+   R + D     +STCS++P
Sbjct: 101 LMAILRMSADGGCRNFSTCSSHP 123


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 309 LTDKQLSRLLITTNFTKSHC 250
           LTD    R+ + T FT S+C
Sbjct: 202 LTDTNEIRIFVATIFTFSYC 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,363
Number of Sequences: 438
Number of extensions: 3759
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)