Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10a07
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65360.1 68418.m08221 histone H3 identical to histone H3 from... 266 8e-72
At5g10400.1 68418.m01206 histone H3 identical to several histone... 266 8e-72
At5g10390.1 68418.m01205 histone H3 identical to histone H3 from... 266 8e-72
At3g27360.1 68416.m03421 histone H3 identical to histone H3 from... 266 8e-72
At1g09200.1 68414.m01027 histone H3 identical to histone H3 from... 266 8e-72
At5g10980.1 68418.m01277 histone H3 identical to HISTONE H3.2, M... 265 2e-71
At4g40040.1 68417.m05668 histone H3.2 identical to Histone H3.2,... 265 2e-71
At4g40030.1 68417.m05667 histone H3.2 identical to Histone H3.2,... 265 2e-71
At5g65350.1 68418.m08220 histone H3 nearly identical to histone ... 256 2e-68
At1g75600.1 68414.m08784 histone H3.2, putative strong similarit... 256 2e-68
At1g13370.1 68414.m01554 histone H3, putative strong similarity ... 251 3e-67
At1g19890.1 68414.m02494 histone H3, putative similar to histone... 239 2e-63
At5g12910.1 68418.m01481 histone H3, putative similar to histone... 193 9e-50
At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12) si... 113 2e-25
At5g66410.1 68418.m08376 expressed protein 30 1.9
At2g33670.1 68415.m04126 seven transmembrane MLO family protein ... 28 5.8
At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni... 28 7.6
At2g44210.1 68415.m05502 expressed protein Pfam profile PF03080... 28 7.6
At1g18350.1 68414.m02293 mitogen-activated protein kinase kinase... 28 7.6
>At5g65360.1 68418.m08221 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 266 bits (653), Expect = 8e-72
Identities = 129/136 (94%), Positives = 135/136 (99%)
Frame = +1
Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 475 MPKDIQLARRIRGERA 522
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At5g10400.1 68418.m01206 histone H3 identical to several histone H3
proteins, including Zea mays SP|P05203, Medicago sativa
GI:166384, Encephalartos altensteinii SP|P08903, Pisum
sativum SP|P02300; contains Pfam profile PF00125 Core
histone H2A/H2B/H3/H4
Length = 136
Score = 266 bits (653), Expect = 8e-72
Identities = 129/136 (94%), Positives = 135/136 (99%)
Frame = +1
Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 475 MPKDIQLARRIRGERA 522
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At5g10390.1 68418.m01205 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 266 bits (653), Expect = 8e-72
Identities = 129/136 (94%), Positives = 135/136 (99%)
Frame = +1
Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 475 MPKDIQLARRIRGERA 522
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At3g27360.1 68416.m03421 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 266 bits (653), Expect = 8e-72
Identities = 129/136 (94%), Positives = 135/136 (99%)
Frame = +1
Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 475 MPKDIQLARRIRGERA 522
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At1g09200.1 68414.m01027 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 266 bits (653), Expect = 8e-72
Identities = 129/136 (94%), Positives = 135/136 (99%)
Frame = +1
Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 475 MPKDIQLARRIRGERA 522
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At5g10980.1 68418.m01277 histone H3 identical to HISTONE H3.2,
MINOR, Medicago sativa, SWISSPROT:P11105, histone H3
variant H3.3 Lycopersicon esculentum GI:1435157;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 265 bits (650), Expect = 2e-71
Identities = 130/136 (95%), Positives = 134/136 (98%)
Frame = +1
Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
LLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 475 MPKDIQLARRIRGERA 522
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At4g40040.1 68417.m05668 histone H3.2 identical to Histone H3.2,
minor Lolium temulentum SP|P11105, nearly identical to
histone H3.2 Mus pahari GI:515005; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 265 bits (650), Expect = 2e-71
Identities = 130/136 (95%), Positives = 134/136 (98%)
Frame = +1
Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
LLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 475 MPKDIQLARRIRGERA 522
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At4g40030.1 68417.m05667 histone H3.2 identical to Histone H3.2,
minor Lolium temulentum SP|P11105, nearly identical to
histone H3.2 Mus pahari GI:515005; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 265 bits (650), Expect = 2e-71
Identities = 130/136 (95%), Positives = 134/136 (98%)
Frame = +1
Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
LLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 475 MPKDIQLARRIRGERA 522
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At5g65350.1 68418.m08220 histone H3 nearly identical to histone H3
from Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 139
Score = 256 bits (626), Expect = 2e-68
Identities = 123/136 (90%), Positives = 133/136 (97%)
Frame = +1
Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
MARTKQTAR STGGKAPRKQLA KAAR+SAP+TGGVKKPHR+RPGTVALR+IR+YQKSTE
Sbjct: 1 MARTKQTARISTGGKAPRKQLAPKAARQSAPATGGVKKPHRFRPGTVALRDIRKYQKSTE 60
Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
+LIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 ILIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 475 MPKDIQLARRIRGERA 522
MPK+IQLARRIRGERA
Sbjct: 121 MPKEIQLARRIRGERA 136
>At1g75600.1 68414.m08784 histone H3.2, putative strong similarity
to histone H3.2 SP|P11105 GI:417103 from Lolium
temulentum, histone H3.2 from Mus pahari GI:515005;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 256 bits (626), Expect = 2e-68
Identities = 125/136 (91%), Positives = 131/136 (96%)
Frame = +1
Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
MARTKQTARKS GGKAPR LATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSHGGKAPRTLLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
LLIRKLPFQRLVREIAQD+KTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 475 MPKDIQLARRIRGERA 522
MPKD+QLARRIRGERA
Sbjct: 121 MPKDVQLARRIRGERA 136
>At1g13370.1 68414.m01554 histone H3, putative strong similarity to
Histone H3.2, minor Medicago sativa SP|P11105, histone
H3 Rubus idaeus GI:10732809; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 251 bits (615), Expect = 3e-67
Identities = 123/136 (90%), Positives = 130/136 (95%)
Frame = +1
Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
MARTKQ+ARKS GGKAP KQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQSARKSHGGKAPTKQLATKAARKSAPTTGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
LL RKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLNRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 475 MPKDIQLARRIRGERA 522
MPKD+QLARRIR ERA
Sbjct: 121 MPKDVQLARRIRAERA 136
>At1g19890.1 68414.m02494 histone H3, putative similar to histone H3
from Chlamydomonas reinhardtii GI:571470, Volvox carteri
SP|P08437, histone H3.2 minor from Lolium temulentum
SP|P11105; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 137
Score = 239 bits (584), Expect = 2e-63
Identities = 119/137 (86%), Positives = 127/137 (92%), Gaps = 1/137 (0%)
Frame = +1
Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSA-PSTGGVKKPHRYRPGTVALREIRRYQKST 291
MARTKQTARKSTGGK PRK+LATKAARK+ P GGVK+ HR+RPGTVALREIR+YQKST
Sbjct: 1 MARTKQTARKSTGGKGPRKELATKAARKTRRPYRGGVKRAHRFRPGTVALREIRKYQKST 60
Query: 292 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVT 471
+LLIRKLPFQRLVREIAQDFK DLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVT
Sbjct: 61 DLLIRKLPFQRLVREIAQDFKVDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT 120
Query: 472 IMPKDIQLARRIRGERA 522
IM KDIQLARRIRGERA
Sbjct: 121 IMSKDIQLARRIRGERA 137
>At5g12910.1 68418.m01481 histone H3, putative similar to histone H3
from Mus musculus GI:51301, Gallus gallus GI:211859,
Medicago sativa GI:166384, Pisum sativum SP|P02300;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 131
Score = 193 bits (471), Expect = 9e-50
Identities = 93/135 (68%), Positives = 115/135 (85%)
Frame = +1
Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
MAR+ QTARK+TGGKAP A + + S P +KKP+RY+PGTVALREIR+YQK+T+
Sbjct: 1 MARSNQTARKATGGKAPH--FAMRVWQHSTPP---LKKPYRYKPGTVALREIRKYQKTTD 55
Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
L+IRKLPFQRLV+EIAQ K DLRFQ+ A+ ALQEA+EA++VG+FEDTNLCA+HAKR TI
Sbjct: 56 LVIRKLPFQRLVKEIAQSLKADLRFQTGAVSALQEAAEAFMVGMFEDTNLCAMHAKRSTI 115
Query: 475 MPKDIQLARRIRGER 519
MPKDIQLA+R+RG+R
Sbjct: 116 MPKDIQLAKRLRGDR 130
>At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12)
similar to histone H3 GB:X17141 GI:10795 from
Tetrahymena pyriformis, GI:161790 from Tetrahymena
thermophila; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 178
Score = 113 bits (271), Expect = 2e-25
Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 2/133 (1%)
Frame = +1
Query: 124 TKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLI 303
T+QT ++ R+ K +R++ P G KK +RYRPGTVAL+EIR +QK T LLI
Sbjct: 45 TQQTNPTTSPATGTRR--GAKRSRQAMPR-GSQKKSYRYRPGTVALKEIRHFQKQTNLLI 101
Query: 304 RKLPFQRLVREIAQDFKTDL--RFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIM 477
F R VR I R+ + A+ ALQEA+E YLVGLF D+ LCAIHA+RVT+M
Sbjct: 102 PAASFIREVRSITHMLAPPQINRWTAEALVALQEAAEDYLVGLFSDSMLCAIHARRVTLM 161
Query: 478 PKDIQLARRIRGE 516
KD +LARR+ G+
Sbjct: 162 RKDFELARRLGGK 174
>At5g66410.1 68418.m08376 expressed protein
Length = 230
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +1
Query: 301 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMP 480
+ L F ++ A+D+K ++ A G+ E L L +D L +HA R+ +
Sbjct: 10 LSNLAFGNVLAAAARDYKKEVLANEKAQGSRPVNEEVDLDELMDDPELEKLHADRIAALR 69
Query: 481 KDIQ 492
++++
Sbjct: 70 REVE 73
>At2g33670.1 68415.m04126 seven transmembrane MLO family protein /
MLO-like protein 5 (MLO5) identical to MLO-like protein
5 (AtMlo5) [Arabidopsis thaliana] SWISS-PROT:O22815;
similar to MLO protein SWISS-PROT:P93766,
NCBI_gi:1877221 [Hordeum vulgare][Barley]
Length = 501
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 179 ASCLRGALPPVDLRAVCLVRAIVYFFNVFH 90
A C +G +P + L A+ V ++F VFH
Sbjct: 132 AQCKKGYVPLISLNALHQVHIFIFFLAVFH 161
>At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6A) identical to CSN complex subunit 6A [Arabidopsis
thaliana] GI:18056665, COP9 complex subunit 6
[Arabidopsis thaliana] GI:15809663; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; identical to
cDNA CSN complex subunit 6A (CSN6A) GI:18056664
Length = 317
Score = 27.9 bits (59), Expect = 7.6
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = -1
Query: 528 NLSTFTTDSSSKLN---ILRHDGHTFGVNSTQVGVFEQANEISLACLLESSDGGRLETQI 358
N+S T ++LN + GH G N+ + +F+Q N C++ G +E
Sbjct: 20 NISDHYTRVKTQLNPPASICASGH--GSNNGEA-MFQQ-NPRVYGCVIGVQRGRTVEIFN 75
Query: 357 SFEILSDFSHKTLERQLTDKQ 295
SFE+L D S +TL+R +K+
Sbjct: 76 SFELLYDPSTQTLDRSFLEKK 96
>At2g44210.1 68415.m05502 expressed protein Pfam profile PF03080:
Arabidopsis proteins of unknown function
Length = 415
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 564 YRITSNQNYN*TNLSTFTTDSSSKL-NILRHDGHTFGVNSTQVGVF 430
YR +S +NY N + SS+ N+L +GH + + GVF
Sbjct: 133 YRASSVENYGMKNQKSIPKPKSSEPPNVLTQNGHQHAIMYVEDGVF 178
>At1g18350.1 68414.m02293 mitogen-activated protein kinase kinase
(MAPKK), putative (MKK7) mitogen-activated protein
kinase kinase (MAPKK) family, PMID:12119167
Length = 307
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = -1
Query: 516 FTTDSSSKLNILRHDGHTFGVNSTQVGVFEQANEISLACLLESSDGGRLET---QISFEI 346
FT + ++ ILR + V G+FE+ ++ L+E DGG LE+ ++ +
Sbjct: 84 FTRQLAREMEILRRTDSPYVVRCQ--GIFEKPIVGEVSILMEYMDGGNLESLRGAVTEKQ 141
Query: 345 LSDFSHKTLE 316
L+ FS + L+
Sbjct: 142 LAGFSRQILK 151
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,491,752
Number of Sequences: 28952
Number of extensions: 274794
Number of successful extensions: 666
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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