Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a06
         (474 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.1  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    23   1.4  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    23   1.4  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   3.3  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   5.8  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   5.8  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   5.8  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   5.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 94   SHWETQGDTEFRSRGTTTSS 35
            +HW+T+  T   +R TTT S
Sbjct: 1181 NHWQTKTTTSTTTRPTTTVS 1200


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 340 YDTRIVLKVYKYSITPSERFPLPDD 266
           Y   +VL    YS+   E F  PDD
Sbjct: 4   YACLLVLSALIYSVLGQENFKCPDD 28


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 340 YDTRIVLKVYKYSITPSERFPLPDD 266
           Y   +VL    YS+   E F  PDD
Sbjct: 4   YACLLVLSALIYSVLGQENFKCPDD 28


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +1

Query: 37  RTWWFRGSEIPYLPGSPSGSSNQL 108
           R WW R   + Y+  + SG    L
Sbjct: 73  RPWWERYQPVSYILNTRSGDETAL 96


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +1

Query: 37  RTWWFRGSEIPYLPGSPSGSSNQL 108
           R WW R   + Y+  + SG    L
Sbjct: 72  RPWWERYQPVSYILNTRSGDEAAL 95


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +1

Query: 37  RTWWFRGSEIPYLPGSPSGSSNQL 108
           R WW R   + Y+  + SG    L
Sbjct: 73  RPWWERYQPVSYILNTRSGDEAAL 96


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +2

Query: 149 VQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVI 271
           +QG       +   G+   ++  VKK KPE+    + A ++
Sbjct: 144 IQGTASEATLVALLGAKARMIDRVKKEKPEMSDSEIVAKLV 184


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 144 ITYRFFAPVLSAQLITAPTGRP 79
           I  RF +  + A L+T+P  RP
Sbjct: 225 IVERFTSDRVHAALVTSPRARP 246


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,129
Number of Sequences: 336
Number of extensions: 2650
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11036865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)