BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmnc10a06 (474 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23) 181 3e-46 SB_52932| Best HMM Match : Ank (HMM E-Value=0) 30 1.1 SB_10243| Best HMM Match : Ank (HMM E-Value=0) 30 1.1 SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6 SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 28 3.4 SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5 SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5 SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18) 27 6.0 SB_59186| Best HMM Match : rve (HMM E-Value=0.00029) 27 7.9 SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022) 27 7.9 SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13) 27 7.9 SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) 27 7.9 SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041) 27 7.9 SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9 SB_18995| Best HMM Match : rve (HMM E-Value=0.0012) 27 7.9 SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14) 27 7.9 >SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23) Length = 145 Score = 181 bits (440), Expect = 3e-46 Identities = 84/106 (79%), Positives = 96/106 (90%) Frame = +2 Query: 35 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 214 RGRGG++G KFRI+LGLPVGAVINCADNTG KNLY+IAV+GIKGRLNRLPAA SGDM++A Sbjct: 23 RGRGGTSGGKFRIALGLPVGAVINCADNTGGKNLYIIAVKGIKGRLNRLPAAASGDMVLA 82 Query: 215 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 352 TVKKGKPELRKKVMPAVVIRQRK +RR++GVF+YFE N V V + Sbjct: 83 TVKKGKPELRKKVMPAVVIRQRKAYRRKNGVFLYFEANIKVRVRKQ 128 >SB_52932| Best HMM Match : Ank (HMM E-Value=0) Length = 1266 Score = 29.9 bits (64), Expect = 1.1 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +2 Query: 83 LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 175 L +GA ++CADN G L +A QG +N Sbjct: 913 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 943 >SB_10243| Best HMM Match : Ank (HMM E-Value=0) Length = 475 Score = 29.9 bits (64), Expect = 1.1 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +2 Query: 83 LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 175 L +GA ++CADN G L +A QG +N Sbjct: 109 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 139 >SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4865 Score = 28.7 bits (61), Expect = 2.6 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Frame = -3 Query: 367 ALHFALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 236 A FA+ Y R L Y+Y TPS+ F D CR L FP F Sbjct: 3671 ASRFAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 3714 >SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) Length = 305 Score = 28.3 bits (60), Expect = 3.4 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = -1 Query: 180 SLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAPAEPPRP 37 SLF++ T T AP L + APT P ++ AP PP P Sbjct: 67 SLFKKKKQAPTPQTQASTAPPLVPAGVEAPTPTPMVAQSVAPTPPPPP 114 >SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 105 Score = 27.9 bits (59), Expect = 4.5 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Frame = -3 Query: 358 FALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 236 FA+ Y R L Y+Y TPS+ F D CR L FP F Sbjct: 2 FAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 42 >SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 381 Score = 27.9 bits (59), Expect = 4.5 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = -3 Query: 166 TFDTLDSDHIQILCPCVVGAVDYCSHWETQGDT 68 T + + +I CP VVG V+ CS W T Sbjct: 330 TVKDVATKYIYDRCPAVVGVVEACSSWAVLAKT 362 >SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18) Length = 593 Score = 27.5 bits (58), Expect = 6.0 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = -1 Query: 390 ATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTAGIT 250 AT V A + L T+ PAL++K+IN +R N + L+ +T Sbjct: 186 ATSMVTAPTSKTSLTTTLRPALTAKHINITNRTANVVKKLIKIGLLT 232 >SB_59186| Best HMM Match : rve (HMM E-Value=0.00029) Length = 346 Score = 27.1 bits (57), Expect = 7.9 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = -1 Query: 135 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 34 R + P L + AP+G P + + APA P PRPL Sbjct: 283 RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 316 >SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022) Length = 192 Score = 27.1 bits (57), Expect = 7.9 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%) Frame = -3 Query: 367 ALHFALVIDYDTRIVLKVYK-YSITPSE 287 AL FAL + YDT+I++ K YSI+P E Sbjct: 137 ALLFALYLVYDTQIMMGGGKMYSISPEE 164 >SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13) Length = 347 Score = 27.1 bits (57), Expect = 7.9 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = -1 Query: 135 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 34 R + P L + AP+G P + + APA P PRPL Sbjct: 287 RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 320 >SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) Length = 1026 Score = 27.1 bits (57), Expect = 7.9 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = -1 Query: 135 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 34 R + P L + AP+G P + + APA P PRPL Sbjct: 963 RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 996 >SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041) Length = 1155 Score = 27.1 bits (57), Expect = 7.9 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = -1 Query: 135 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 34 R + P L + AP+G P + + APA P PRPL Sbjct: 1092 RAYTPALPT-IPMAPSGAPAKTPSVAPAAPSPRPL 1125 >SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1662 Score = 27.1 bits (57), Expect = 7.9 Identities = 17/46 (36%), Positives = 20/46 (43%) Frame = +1 Query: 76 PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFWGHDCG 213 P S SS+ R +H+GK S RSP T G HD G Sbjct: 107 PNPASLSSHSRRERHQGKGSPMSSPAMRPRSPMVTPGSHS-NHDAG 151 >SB_18995| Best HMM Match : rve (HMM E-Value=0.0012) Length = 1225 Score = 27.1 bits (57), Expect = 7.9 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -1 Query: 213 ATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITA 94 AT S + A+ SL PW+ T+R P +SA+ TA Sbjct: 816 ATSRSGDSASRSLTNLGCYPWSKQTFRHEGPPISARPCTA 855 >SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14) Length = 865 Score = 27.1 bits (57), Expect = 7.9 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = -1 Query: 135 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 34 R + P L + AP+G P + + APA P PRPL Sbjct: 805 RAYTPALPT-IPQAPSGAPAKTLSVAPAAPSPRPL 838 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,957,155 Number of Sequences: 59808 Number of extensions: 353649 Number of successful extensions: 923 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 864 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 919 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 994359969 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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