Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a06
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    28   0.059
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    27   0.10 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.9  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 27.9 bits (59), Expect = 0.059
 Identities = 12/55 (21%), Positives = 21/55 (38%)
 Frame = -3

Query: 268 DHCRHYLFPEFRFTLFDCGHNHVPRTGRRQSVQATFDTLDSDHIQILCPCVVGAV 104
           D C  Y +    +T  DCG    P   +R   Q   + +  +    + P V+  +
Sbjct: 471 DQCEEYEYVHDEYTCMDCGPGKWPHEDKRGCYQLAINHIRWNSAFAIAPAVISCL 525


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 27.1 bits (57), Expect = 0.10
 Identities = 12/55 (21%), Positives = 21/55 (38%)
 Frame = -3

Query: 268 DHCRHYLFPEFRFTLFDCGHNHVPRTGRRQSVQATFDTLDSDHIQILCPCVVGAV 104
           D C  Y +    +T  DCG    P   +R   Q   + +  +    + P V+  +
Sbjct: 561 DQCEEYEYVYDEYTCMDCGPGKWPHEDKRGCYQLAINHIRWNSAFAIAPAVISCL 615


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 246  FRSSGLPFLTVATIMSPEPAAGSLFRRPLIP 154
            F  S +PF++   I++  P +     RP+IP
Sbjct: 1034 FHYSVVPFVSNHDILNLRPLSMEKGTRPMIP 1064


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 280 PLPDDHCRHYLFPEFRFTLFD 218
           PL +DH  HY  P      FD
Sbjct: 199 PLKEDHDDHYGVPTLEELGFD 219


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 98  VINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSG 199
           +IN +++ G K     AV+     +N   A+GSG
Sbjct: 571 IINSSNDEGGKTSPNSAVRKCMSPINGSGASGSG 604


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,761
Number of Sequences: 438
Number of extensions: 3382
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)