Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10a06
(474 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) simi... 239 9e-64
At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B) 239 9e-64
At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A) iden... 239 9e-64
At5g46160.2 68418.m05678 ribosomal protein L14 family protein / ... 53 9e-08
At5g46160.1 68418.m05677 ribosomal protein L14 family protein / ... 53 9e-08
At1g17560.1 68414.m02163 ribosomal protein L14 family protein si... 49 2e-06
At1g48700.1 68414.m05450 oxidoreductase, 2OG-Fe(II) oxygenase-re... 30 0.70
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle... 29 2.1
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ... 28 2.8
At3g13330.1 68416.m01678 expressed protein 27 4.9
At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2... 27 6.5
At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family... 27 8.6
At4g23150.1 68417.m03341 protein kinase family protein contains ... 27 8.6
At3g10880.1 68416.m01310 hypothetical protein 27 8.6
>At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) similar
to ribosomal protein L17 GB:AAA34113.1 from [Nicotiana
tabacum]
Length = 140
Score = 239 bits (584), Expect = 9e-64
Identities = 106/131 (80%), Positives = 124/131 (94%)
Frame = +2
Query: 26 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 205
MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
Query: 206 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 385
++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
Query: 386 VAKECADLWPR 418
+ KECADLWPR
Sbjct: 121 IGKECADLWPR 131
>At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B)
Length = 140
Score = 239 bits (584), Expect = 9e-64
Identities = 106/131 (80%), Positives = 124/131 (94%)
Frame = +2
Query: 26 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 205
MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
Query: 206 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 385
++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
Query: 386 VAKECADLWPR 418
+ KECADLWPR
Sbjct: 121 IGKECADLWPR 131
>At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A)
identical to GB:AAB80655
Length = 140
Score = 239 bits (584), Expect = 9e-64
Identities = 106/131 (80%), Positives = 124/131 (94%)
Frame = +2
Query: 26 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 205
MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
Query: 206 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 385
++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
Query: 386 VAKECADLWPR 418
+ KECADLWPR
Sbjct: 121 IGKECADLWPR 131
>At5g46160.2 68418.m05678 ribosomal protein L14 family protein /
huellenlos paralog (HLP) contains Pfam profile PF00238:
Ribosomal protein L14p/L23e; identical to cDNA
HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
product GU:18140859
Length = 172
Score = 53.2 bits (122), Expect = 9e-08
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Frame = +2
Query: 83 LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---V 253
+ +G V+ DN+GAK V+ +Q +KG+ A GD IVA+VK+ P + K V
Sbjct: 47 IQMGTVLKVVDNSGAKK--VMCIQALKGK----KGARLGDTIVASVKEAMPNGKVKKGAV 100
Query: 254 MPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMK-------GSAITGPVAKE 397
+ VV+R R DG + F+DNA V+V++K + G+ + GPV E
Sbjct: 101 VYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHE 155
>At5g46160.1 68418.m05677 ribosomal protein L14 family protein /
huellenlos paralog (HLP) contains Pfam profile PF00238:
Ribosomal protein L14p/L23e; identical to cDNA
HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
product GU:18140859
Length = 173
Score = 53.2 bits (122), Expect = 9e-08
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Frame = +2
Query: 83 LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---V 253
+ +G V+ DN+GAK V+ +Q +KG+ A GD IVA+VK+ P + K V
Sbjct: 48 IQMGTVLKVVDNSGAKK--VMCIQALKGK----KGARLGDTIVASVKEAMPNGKVKKGAV 101
Query: 254 MPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMK-------GSAITGPVAKE 397
+ VV+R R DG + F+DNA V+V++K + G+ + GPV E
Sbjct: 102 VYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHE 156
>At1g17560.1 68414.m02163 ribosomal protein L14 family protein
similar to GB:Z98756 from (Mycobacterium leprae)
Length = 196
Score = 48.8 bits (111), Expect = 2e-06
Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Frame = +2
Query: 83 LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKV--- 253
+ +G ++ C DN+ AK V+ +Q ++G+ A GD+IV +VK+ P ++KKV
Sbjct: 49 IQMGTILKCVDNSCAKE--VMCIQSLRGK----KGARLGDIIVGSVKEANPIVQKKVKKD 102
Query: 254 -MP-----------AVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKG 367
+P VV+R P R DG + F+DNA V+V K E KG
Sbjct: 103 AIPKGKVKKGMVVYGVVVRAAMPKGRADGSQVKFDDNAIVVVGIK-EKKG 151
>At1g48700.1 68414.m05450 oxidoreductase, 2OG-Fe(II)
oxygenase-related contains weak hit to Pfam PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 286
Score = 30.3 bits (65), Expect = 0.70
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -3
Query: 343 DYDTRIVLKVYKYSITPSE-RFPL--PDDHCRHYLFPEFRFTLFDCGHNHVPRTGRRQSV 173
D+ +++L+V + +E F + PD+ ++ FPE T+FD + G +
Sbjct: 91 DFSEKLLLEVENFRKWANETNFTIRRPDNTSKYVFFPEVCGTMFDSHYGFFIENGEDRDA 150
Query: 172 QATFDTLDSDHIQILC 125
F DSD +C
Sbjct: 151 DVGFHVEDSDITLNVC 166
>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
family protein contains Pfam domains PF00567: Tudor
domain and PF00565: Staphylococcal nuclease homologue
Length = 985
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 259 RHYLFPEFRFTLFDCGHNHVPRTGRRQSVQ 170
R YL PEF+F P GRRQS Q
Sbjct: 204 RVYLLPEFQFVQVFVAGLQAPSMGRRQSTQ 233
>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 675
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 331 RIVLKVYKYSITPSERFPLPDDHCRHYL 248
RI L V K + P P P +CRHYL
Sbjct: 333 RIALGVKKLKLKPVAPKPKPIKYCRHYL 360
>At3g13330.1 68416.m01678 expressed protein
Length = 1711
Score = 27.5 bits (58), Expect = 4.9
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = -3
Query: 457 NVYSSYRARV*GNTRPQISTFFGYRPCDGRALHFALVIDYDTRIVLKVYKYSITPSERFP 278
N+ S + V G+T + + G D +LH+ + + ++L V I PS
Sbjct: 997 NILRSLESHVEGSTSGDLVSQIGSMSFDSSSLHWRYNLMANRVLLLLVMSSRIDPSFSLK 1056
Query: 277 LPDDHCRHYL 248
+ D+ H+L
Sbjct: 1057 ILDETAGHFL 1066
>At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2)
(YLS6) identical to SP|O64637 Cytochrome P450 76C2 (EC
1.14.-.-) {Arabidopsis thaliana}, cDNA YLS6 mRNA for
cytochrome P450 (CYP76C2), partial cds GI:13122289
Length = 512
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 138 YRFFAPVLSAQLITAPTGRPREIRNFAPAEPPRPLLDIL 22
+ F VLS +I T RPR R P+ P P L I+
Sbjct: 10 FPLFCFVLSFFIIFFTTTRPRSSRKVVPSPPGPPRLPII 48
>At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 615
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 215 WPQSCPQNRPPAVCSGDL*YLGQRSHTD 132
WP S + + P +CS + Y+ SH D
Sbjct: 96 WPTSGGKEKTPYICSSPIKYMYCNSHPD 123
>At4g23150.1 68417.m03341 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 659
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 109 AVDYCSHWETQGDTEFRSRGTTTSSLRH 26
AV S QGDTEF++ ++LRH
Sbjct: 362 AVKRLSKTSEQGDTEFKNEVVVVANLRH 389
>At3g10880.1 68416.m01310 hypothetical protein
Length = 278
Score = 26.6 bits (56), Expect = 8.6
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = -3
Query: 181 QSVQATFDTLDSDHIQILC--PC-VVGAVDYCSHWETQGDTEFRSRGTTTSSLRHFVVS 14
QS+ T++ L+ + + L PC +V ++ S ++ + S GT+ SSL H VVS
Sbjct: 18 QSLGETYNDLNQELLNGLLKLPCSLVTSMGALSTFKPDKSPDLESGGTSYSSLNHQVVS 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,993,121
Number of Sequences: 28952
Number of extensions: 238519
Number of successful extensions: 750
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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