Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10a05
(347 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_27103| Best HMM Match : Lipoprotein_3 (HMM E-Value=10) 26 7.3
SB_24740| Best HMM Match : Fer2 (HMM E-Value=1.3) 26 7.3
SB_18494| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.3
SB_43579| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.3
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 26 7.3
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 26 9.7
SB_10821| Best HMM Match : TFIIB (HMM E-Value=0.35) 26 9.7
SB_22144| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
SB_20498| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 111 GCWPSISSGSTSQRIHRRRSAFYMYVHT 28
G W + + S R+H+RR+A ++Y T
Sbjct: 337 GIWHTRRTSSRGIRLHKRRNAMFVYAKT 364
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = -2
Query: 277 PSFFVNLTMQSSDSPILRIAPQTTYILDVSAARPVAGSTSAIT 149
P V ++ Q +P + +AP+TT + + + A T T
Sbjct: 396 PEISVTISTQPKKAPGITVAPETTVVPETTVASETTAETHQTT 438
>SB_27103| Best HMM Match : Lipoprotein_3 (HMM E-Value=10)
Length = 476
Score = 26.2 bits (55), Expect = 7.3
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = -3
Query: 105 WPSISSGSTSQR---IHRRRSAFYMYVHTVHGIDRCE 4
W ++ G S R IHRR +++ IDRC+
Sbjct: 62 WRDLAQGKRSSRGDYIHRRLDYLFLFDDLQSSIDRCD 98
>SB_24740| Best HMM Match : Fer2 (HMM E-Value=1.3)
Length = 214
Score = 26.2 bits (55), Expect = 7.3
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Frame = +3
Query: 21 RVPCGRTYKMQNDAGEFVD--LYCPRKCSAS----NRLIHAKDHASVQLVIADVDPATGR 182
RV CG+TY +ND D Y S S +R IH + S Q ++ A +
Sbjct: 43 RVECGKTYTFKNDRIRVFDDVKYLSTNTSTSIEPADRQIHDINLTSEQFA-ENIIGANVK 101
Query: 183 AADTSKMYVVCGAIRRMGESDDCIV 257
AA++ VVC +S+D ++
Sbjct: 102 AANSC---VVCNTTLNQDDSEDDMI 123
>SB_18494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1867
Score = 26.2 bits (55), Expect = 7.3
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Frame = +3
Query: 21 RVPCGRTYKMQNDAGEFVD--LYCPRKCSAS----NRLIHAKDHASVQLVIADVDPATGR 182
RV CG+TY +ND D Y S S +R IH + S Q ++ A +
Sbjct: 1575 RVECGKTYTFKNDRIRVFDDVKYLSTNTSTSIEPADRQIHDINLTSEQFA-ENIIGANVK 1633
Query: 183 AADTSKMYVVCGAIRRMGESDDCIV 257
AA++ VVC +S+D ++
Sbjct: 1634 AANSC---VVCNTTLNQDDSEDDMI 1655
>SB_43579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 26.2 bits (55), Expect = 7.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 111 RLIHAKDHASVQLVIADVDPATGR 182
R+ H +HA Q++ A +DP TG+
Sbjct: 44 RVHHGINHAKSQILTAKLDPLTGK 67
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 26.2 bits (55), Expect = 7.3
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -2
Query: 259 LTMQSSDSPILRIAPQTTYILDVSAA 182
+T +++ +P +AP+TT +L+ SAA
Sbjct: 7 VTAETTAAPETTVAPETTAVLETSAA 32
>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 275
Score = 25.8 bits (54), Expect = 9.7
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +3
Query: 147 LVIADVDPATGRAADTSKMYVVCGAI 224
L++AD+ P T +Y++C I
Sbjct: 249 LIVADILPPTSEVVPVISIYIICSTI 274
>SB_10821| Best HMM Match : TFIIB (HMM E-Value=0.35)
Length = 473
Score = 25.8 bits (54), Expect = 9.7
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 28 RVDVHIKCRTTPVNSLTCTARGNARPATAS-STLRT 132
+V VHIK RT P S T + NAR ++ S L+T
Sbjct: 6 QVTVHIKKRTEPQESDQKTKKNNARGSSRGYSGLKT 41
>SB_22144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 51 AFYMYVHTVHGIDRCES 1
AFY+ +HTV G+D+ E+
Sbjct: 293 AFYLEMHTVAGVDQSET 309
>SB_20498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 51 AFYMYVHTVHGIDRCES 1
AFY+ +HTV G+D+ E+
Sbjct: 54 AFYLEMHTVAGVDQSET 70
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,137,404
Number of Sequences: 59808
Number of extensions: 203048
Number of successful extensions: 631
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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