Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10a05
(347 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B) ribo... 78 1e-15
At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C) ribo... 77 4e-15
At3g04890.1 68416.m00531 expressed protein 28 2.0
At1g48090.1 68414.m05362 C2 domain-containing protein contains P... 27 3.4
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 26 6.0
At1g73000.1 68414.m08442 hypothetical protein 26 6.0
At3g18390.1 68416.m02339 expressed protein contains Pfam domain,... 26 7.9
At1g68020.2 68414.m07771 glycosyl transferase family 20 protein ... 26 7.9
At1g68020.1 68414.m07770 glycosyl transferase family 20 protein ... 26 7.9
>At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B)
ribosomal protein S21, cytosolic - Oryza sativa,
PIR:S38357
Length = 82
Score = 78.2 bits (184), Expect = 1e-15
Identities = 38/81 (46%), Positives = 53/81 (65%)
Frame = +3
Query: 48 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 227
M+NDAG+ +LY PRKCSA+NR+I +KDHASVQL I +D A G + +CG +R
Sbjct: 1 MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLD-ANGLYTGQFTTFALCGFVR 59
Query: 228 RMGESDDCIVRLTKKDGILAK 290
G++D + RL +K + AK
Sbjct: 60 AQGDADSGVDRLWQKKKVEAK 80
>At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C)
ribosomal protein S21, Zea mays, PIR:T03945
Length = 85
Score = 76.6 bits (180), Expect = 4e-15
Identities = 38/81 (46%), Positives = 52/81 (64%)
Frame = +3
Query: 48 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 227
MQN+ G+ +LY PRKCSA+NRLI +KDHASVQL I +D A G + +CG +R
Sbjct: 1 MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLD-ANGLYTGQFTTFALCGFVR 59
Query: 228 RMGESDDCIVRLTKKDGILAK 290
G++D + RL +K + AK
Sbjct: 60 AQGDADSGVDRLWQKKKVEAK 80
>At3g04890.1 68416.m00531 expressed protein
Length = 216
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 102 ASNRLIHAKDHASVQLVIADVDPATG-RAADTSKMYVVCGAIRRMGESDDCI 254
+S + KD + ++ DVD G +D Y V G + SDDCI
Sbjct: 57 SSTSIATNKDRSKNEVTAGDVDDVMGILRSDYRNFYFVTGVLTSAIYSDDCI 108
>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 4144
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -2
Query: 148 SCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV--RPH 29
+C+ W + W + E G+ NSP S ILY+ +PH
Sbjct: 4019 ACSIQWDILWNDLVTMELSDGKKDPPNSPPSRLILYLKAKPH 4060
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 214 QTTYILDVSAARPVAGSTSAITSCTE 137
Q T IL+ + +P+ STSAIT TE
Sbjct: 496 QITNILEENVVQPLLVSTSAITLATE 521
>At1g73000.1 68414.m08442 hypothetical protein
Length = 209
Score = 26.2 bits (55), Expect = 6.0
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = -2
Query: 271 FFVNLTMQSSDSPILRIAPQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHF 92
F + T++ + + I I T + V + P + S + E + R L EH
Sbjct: 81 FIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHR 140
Query: 91 LGQYKSTNSPASFCIL 44
L Y+S S F +L
Sbjct: 141 LNNYRSVTSVNEFVVL 156
>At3g18390.1 68416.m02339 expressed protein contains Pfam domain,
PF04581: Protein of unknown function (DUF578)
Length = 848
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 60 AGEFVDLYCPRKCSASNRLIHAKDHASVQLVIAD 161
AG L+ P SA + +AKD+ S LVI D
Sbjct: 341 AGPKETLFVPDVSSAGDEATNAKDNQSAPLVIKD 374
>At1g68020.2 68414.m07771 glycosyl transferase family 20 protein /
trehalose-phosphatase family protein similar to
SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
[UDP-forming] 56 kDa subunit (EC 2.4.1.15)
(Trehalose-6-phosphate synthase) {Saccharomyces
cerevisiae}; contains Pfam profile: PF02358
trehalose-phosphatase
Length = 860
Score = 25.8 bits (54), Expect = 7.9
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -2
Query: 172 AGSTSAITSCTEAWSLAW 119
+GS+S+ T C++ W+ +W
Sbjct: 75 SGSSSSSTCCSKGWNFSW 92
>At1g68020.1 68414.m07770 glycosyl transferase family 20 protein /
trehalose-phosphatase family protein similar to
SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
[UDP-forming] 56 kDa subunit (EC 2.4.1.15)
(Trehalose-6-phosphate synthase) {Saccharomyces
cerevisiae}; contains Pfam profile: PF02358
trehalose-phosphatase
Length = 700
Score = 25.8 bits (54), Expect = 7.9
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -2
Query: 172 AGSTSAITSCTEAWSLAW 119
+GS+S+ T C++ W+ +W
Sbjct: 75 SGSSSSSTCCSKGWNFSW 92
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,549,517
Number of Sequences: 28952
Number of extensions: 137256
Number of successful extensions: 339
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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