BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmnc10a01 (770 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 326 1e-89 At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 320 8e-88 At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 320 8e-88 At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 320 8e-88 At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 320 8e-88 At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 318 3e-87 At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 74 1e-13 At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 34 0.090 At1g72390.1 68414.m08373 expressed protein 32 0.36 At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A... 29 3.4 At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A... 29 3.4 At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 4.5 At3g01450.1 68416.m00069 expressed protein 29 4.5 At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 5.9 At3g59580.1 68416.m06648 RWP-RK domain-containing protein simila... 28 7.9 At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 7.9 At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 28 7.9 At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 28 7.9 >At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ribosomal protein S2 - Arabidopsis thaliana, SWISSPROT:RS2_ARATH Length = 276 Score = 326 bits (800), Expect = 1e-89 Identities = 147/199 (73%), Positives = 173/199 (86%) Frame = +1 Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351 ++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID +GPSL DEV+KIMPVQKQ Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100 Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 531 TRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIG Sbjct: 101 TRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIG 160 Query: 532 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 711 KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 220 Query: 712 FXXXXXXXXXXXXXXLTPD 768 F LTP+ Sbjct: 221 FVKATFDCLQKTYGFLTPE 239 >At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar to ribosomal protein S2 GI:430711 from [Drosophila melanogaster] Length = 284 Score = 320 bits (785), Expect = 8e-88 Identities = 147/199 (73%), Positives = 169/199 (84%) Frame = +1 Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351 ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108 Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 531 TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168 Query: 532 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 711 KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228 Query: 712 FXXXXXXXXXXXXXXLTPD 768 F LTP+ Sbjct: 229 FVKATFDCLQKTYGFLTPE 247 >At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar to ribosomal protein S2 GI:939717 from [Urechis caupo] Length = 284 Score = 320 bits (785), Expect = 8e-88 Identities = 147/199 (73%), Positives = 169/199 (84%) Frame = +1 Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351 ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108 Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 531 TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168 Query: 532 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 711 KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228 Query: 712 FXXXXXXXXXXXXXXLTPD 768 F LTP+ Sbjct: 229 FVKATFDCLQKTYGFLTPE 247 >At1g58684.1 68414.m06657 40S ribosomal protein S2, putative Length = 284 Score = 320 bits (785), Expect = 8e-88 Identities = 147/199 (73%), Positives = 169/199 (84%) Frame = +1 Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351 ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108 Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 531 TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168 Query: 532 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 711 KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228 Query: 712 FXXXXXXXXXXXXXXLTPD 768 F LTP+ Sbjct: 229 FVKATFDCLQKTYGFLTPE 247 >At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar to ribosomal protein S2 GI:939717 from (Urechis caupo) Length = 284 Score = 320 bits (785), Expect = 8e-88 Identities = 147/199 (73%), Positives = 169/199 (84%) Frame = +1 Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351 ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108 Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 531 TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168 Query: 532 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 711 KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228 Query: 712 FXXXXXXXXXXXXXXLTPD 768 F LTP+ Sbjct: 229 FVKATFDCLQKTYGFLTPE 247 >At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) Length = 285 Score = 318 bits (780), Expect = 3e-87 Identities = 145/199 (72%), Positives = 169/199 (84%) Frame = +1 Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351 ++++WVPVTKLGRLV G I ++E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109 Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 531 TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 169 Query: 532 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 711 KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 229 Query: 712 FXXXXXXXXXXXXXXLTPD 768 F LTP+ Sbjct: 230 FVKATFDCLQKTYGFLTPE 248 >At2g33800.1 68415.m04147 ribosomal protein S5 family protein contains Pfam profiles PF03719: Ribosomal protein S5, C-terminal domain, PF00333: Ribosomal protein S5, N-terminal domain Length = 303 Score = 73.7 bits (173), Expect = 1e-13 Identities = 40/132 (30%), Positives = 72/132 (54%) Frame = +1 Query: 316 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 495 + V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++ Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208 Query: 496 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCY 675 V + K T P + G G+ V L PA GTG+++ + +L+MAGV++ Sbjct: 209 QV-------PMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENAL 261 Query: 676 TSARGSTGTLGN 711 GS L N Sbjct: 262 GKQLGSNNALNN 273 >At1g64880.1 68414.m07355 ribosomal protein S5 family protein contains similarity to 30S ribosomal protein S5 GI:6969105 from [Campylobacter jejuni] Length = 515 Score = 34.3 bits (75), Expect = 0.090 Identities = 30/124 (24%), Positives = 55/124 (44%) Frame = +1 Query: 322 VLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPV 501 V+ + V K T+ G+ R+ A + G+ G IG ++ +A++ A ++ V Sbjct: 362 VIDVKKVCKVTKGGRVERYTALMVCGNYEGIIGYAKAKAETGQSAMQKAYEKCFQNLHYV 421 Query: 502 RRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTS 681 R + HT+ + + L PAP TG+ + V K +L +AG ++ + Sbjct: 422 ERH-------EEHTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKNIKSK 474 Query: 682 ARGS 693 GS Sbjct: 475 VIGS 478 >At1g72390.1 68414.m08373 expressed protein Length = 1088 Score = 32.3 bits (70), Expect = 0.36 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = -2 Query: 751 HMSWQWQHMWL*QNFPRCQLNHELRCSSPVHQPSEE-AS*ELAQTQFQYHEGQESAGLLQ 575 +M+ Q Q L Q + QL H+ + P+ QPS++ A Q Q Q HE + A Q Sbjct: 920 YMNQQQQQQQLQQQPQQQQLQHQQQLQQPMSQPSQQLAQSPQQQQQLQQHEQPQQAQQQQ 979 Query: 574 NHT 566 T Sbjct: 980 QAT 982 >At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20) Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis thaliana]; similar to cytochrome P450 71A4, Solanum melongena, PIR2:S36805 Length = 390 Score = 29.1 bits (62), Expect = 3.4 Identities = 14/56 (25%), Positives = 28/56 (50%) Frame = +2 Query: 596 LPLVVLELCLRQFLRSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSL 763 + ++++ LCL L + ++ RTAT + +PW + + ++ L H SL Sbjct: 1 MEMILITLCLTTLLALLLKSILKRTATKNFNLPPSPWRLPVIGNLHQLSLHTHRSL 56 >At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20) Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis thaliana]; similar to cytochrome P450 71A4, Solanum melongena, PIR2:S36805 Length = 497 Score = 29.1 bits (62), Expect = 3.4 Identities = 14/56 (25%), Positives = 28/56 (50%) Frame = +2 Query: 596 LPLVVLELCLRQFLRSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSL 763 + ++++ LCL L + ++ RTAT + +PW + + ++ L H SL Sbjct: 1 MEMILITLCLTTLLALLLKSILKRTATKNFNLPPSPWRLPVIGNLHQLSLHTHRSL 56 >At3g18530.1 68416.m02357 expressed protein similar to unknown protein GB:AAF24615 from [Arabidopsis thaliana] Length = 297 Score = 28.7 bits (61), Expect = 4.5 Identities = 22/72 (30%), Positives = 32/72 (44%) Frame = -1 Query: 524 LLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 345 LL Q L++ + A R VA + H +P + P L P N R+R A CF Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224 Query: 344 CTGMIFRTSSFR 309 +G + R + R Sbjct: 225 -SGCVPRLEAAR 235 >At3g01450.1 68416.m00069 expressed protein Length = 326 Score = 28.7 bits (61), Expect = 4.5 Identities = 19/67 (28%), Positives = 29/67 (43%) Frame = -1 Query: 545 TVCGFPILLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVR 366 T+ +LL Q L++ + A + VA + H +P + P L P N R+R Sbjct: 159 TIDQLDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIR 217 Query: 365 CPARVCF 345 A CF Sbjct: 218 AKASTCF 224 >At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc transporter ZIP2 [Arabidopsis thaliana] gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563 Length = 353 Score = 28.3 bits (60), Expect = 5.9 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +1 Query: 382 AFVAIGDNNGHIGLGVKCSKE 444 AFVA G NN H+G V S+E Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169 >At3g59580.1 68416.m06648 RWP-RK domain-containing protein similar to nodule inception protein [Lotus japonicus] GI:6448579; contains Pfam profile: PF02042 RWP-RK domain Length = 894 Score = 27.9 bits (59), Expect = 7.9 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Frame = -3 Query: 741 GNGSICGFSKISQGAS*TTS*GVAVLYTSHLKKLLRNW---RRHNSSTTRGRNQPDCYRT 571 GNG++ IS S +++ AVL S L +NW R HN+S G + + Sbjct: 738 GNGTVEPNHSISSSMSDSSNSSGAVLLGSSSASLEQNWNQIRTHNNSGESGSSSTLTVKA 797 Query: 570 TLAGDLAR 547 T D R Sbjct: 798 TYREDTVR 805 >At2g04050.1 68415.m00386 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile: PF01554 uncharacterized membrane protein family Length = 476 Score = 27.9 bits (59), Expect = 7.9 Identities = 12/18 (66%), Positives = 12/18 (66%) Frame = +1 Query: 538 HTVPCKVTGKCGSVTVRL 591 H VPCK T K G VTV L Sbjct: 11 HLVPCKDTWKSGQVTVEL 28 >At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong similarity to mitochondrial DnaJ protein (AtJ1) GI:564030 from [Arabidopsis thaliana]; contains Pfam profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal region, PF00684: DnaJ central domain (4 repeats); identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029 Length = 427 Score = 27.9 bits (59), Expect = 7.9 Identities = 18/63 (28%), Positives = 27/63 (42%) Frame = +1 Query: 478 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 657 A +S+ P RG G P T C+ G + + RG+GIV +L+ Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256 Query: 658 GVQ 666 GV+ Sbjct: 257 GVE 259 >At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong similarity to mitochondrial DnaJ protein (AtJ1) GI:564030 from [Arabidopsis thaliana]; contains Pfam profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal region, PF00684: DnaJ central domain (4 repeats); identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029 Length = 408 Score = 27.9 bits (59), Expect = 7.9 Identities = 18/63 (28%), Positives = 27/63 (42%) Frame = +1 Query: 478 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 657 A +S+ P RG G P T C+ G + + RG+GIV +L+ Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256 Query: 658 GVQ 666 GV+ Sbjct: 257 GVE 259 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,197,777 Number of Sequences: 28952 Number of extensions: 384815 Number of successful extensions: 1063 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1023 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1059 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1716774400 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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