Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9p23
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 49 7e-07
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 47 3e-06
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 42 1e-04
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 40 2e-04
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 40 3e-04
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 40 4e-04
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 37 0.003
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 36 0.005
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 36 0.005
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 35 0.009
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 34 0.016
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 34 0.016
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 34 0.016
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 34 0.021
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 33 0.028
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 33 0.037
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 32 0.065
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 32 0.085
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 32 0.085
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.15
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.15
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 31 0.20
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 31 0.20
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 31 0.20
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 30 0.34
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 30 0.34
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 29 0.60
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 29 0.80
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 29 0.80
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 29 0.80
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.1
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 28 1.4
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 1.8
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 27 1.8
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 27 2.4
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 27 2.4
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 27 3.2
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 4.2
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 4.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.2
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 26 5.6
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 7.4
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 7.4
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 25 7.4
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 7.4
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 9.8
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 9.8
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 48.8 bits (111), Expect = 7e-07
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +2
Query: 74 MELTCSLCKKTTKQNEIIVTTT--CGHIFHDDCIQESLKSSHTCPECHKPIKNESL 235
M+LTC +C +N+ T CGHIF +C+Q+ L++ TCP C K + +E++
Sbjct: 103 MDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVPHETV 158
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 46.8 bits (106), Expect = 3e-06
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +2
Query: 62 KILNMELTCSLCKKTTKQNEIIVTTTCGHIFHDDCIQESLKSSHTCPECHKPIKNESLLR 241
++++ E C++C + K N+ ++ C H FH++CI+ L+ + TC C P+ S R
Sbjct: 388 ELIDEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVDPNSQQR 447
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 71 NMELTCSLCKKTTKQNEIIVTTTCGHIFHDDCIQES-LKSSHTCPECHK 214
N+ L C+LCKK + T C +F ++CIQ + L S CP CH+
Sbjct: 277 NISLACTLCKKLAR--NACRTPCCDKLFCEECIQTALLDSDFECPNCHR 323
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 40.3 bits (90), Expect = 2e-04
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 77 ELTCSLCKKTT-KQNEIIVTTTCGHIFHDDCIQESLKSSHTCPECHKPIKN-ESLLRL 244
+ C +C + E ++ +C H H C +E +++++ CP C+K I N SL R+
Sbjct: 268 DCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTCYKTIINVNSLFRI 325
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 39.9 bits (89), Expect = 3e-04
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +2
Query: 86 CSLCKKTTKQNEIIVTTTCGHIFHDDCIQESLKSSHTCPEC 208
C +C+ KQ I TTCGH++ C++ LK S +CP C
Sbjct: 1092 CIICRDIIKQGFI---TTCGHLYCSFCLEAWLKHSSSCPMC 1129
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 39.5 bits (88), Expect = 4e-04
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 80 LTCSLCKKTTKQNEIIVTTTCGHIFHDDCIQESLK-SSHTCPECHKPIKNESLLRLYL 250
L CS+C + ++++I CGH F +C++ + + TCP+C P +L ++L
Sbjct: 637 LKCSVCNFSNWKSKLI--PNCGHAFCSNCMEPFYEHKTSTCPQCETPFSVSDILTIHL 692
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 36.7 bits (81), Expect = 0.003
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +2
Query: 62 KILNMELTCSLCKKTTKQNEIIVTTTCGHIFHDDCIQESLKSSHTCPECHKPIKNESLLR 241
K L+ L C +C + + I T+C H F CI++ L+ CP C P + ES LR
Sbjct: 21 KGLDSSLRCLICHEYFRAPLI---TSCSHTFCSFCIRDYLREHPMCPACRAP-EQESRLR 76
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 35.9 bits (79), Expect = 0.005
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = +2
Query: 80 LTCSLC--KKTTKQNEIIVTTTCGHIFHDDCIQESLKSSHTCP--ECHKPIKNESLLRLY 247
+ C+ C + + + + I CGH+F C +E K + CP C K I + + LY
Sbjct: 145 IACAKCGNELVSDEKKSIFAAKCGHLFCSTCAKELRKKTVPCPVQHCRKRITKKFIFPLY 204
Query: 248 L 250
L
Sbjct: 205 L 205
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 80 LTCSLCKKTTKQNEIIVTTTCGHIFHDDCIQESLKSSHTCPECHKPI 220
L C +C + ++ TT CGH + +C+ LK S +CP C + +
Sbjct: 83 LECPICTEALQRP---FTTHCGHTYCYECLLNWLKESKSCPTCRQKL 126
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 35.1 bits (77), Expect = 0.009
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 77 ELTCSLCKKTTKQNEIIVTTTCGHIFHDDCIQE-SLKSSHTCPECHKPIKN 226
E T LC+ + +++ + C HIFH CI LK+S CP C + + N
Sbjct: 497 ECTICLCEYS-EESPLYRELPCHHIFHPACIDPYLLKNSDLCPLCKQSVTN 546
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 34.3 bits (75), Expect = 0.016
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 125 IVTTTCGHIFHDDCIQESLKSSHTCPEC 208
I CGH FH+ C++ + ++TCP C
Sbjct: 51 IAKIPCGHYFHNHCLESWCRVANTCPLC 78
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 34.3 bits (75), Expect = 0.016
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 140 CGHIFHDDCIQESLKSSHTCPECHKPI 220
CGHI H C++ L+ TCP C + +
Sbjct: 328 CGHILHFHCLRNWLERQQTCPICRRSV 354
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 34.3 bits (75), Expect = 0.016
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 86 CSLCKKTTKQNEIIVTTTCGHIFHDDCIQESLKS-SHTCPECHKPI 220
C +C ++ + + +V C H FH CI + + H CP C+ +
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTCNTEV 366
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 33.9 bits (74), Expect = 0.021
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 71 NMELTCSLCKKTTKQNEIIVTTTCGHIFHDDCIQESLKSSHTCPEC 208
++ C +CKK + + TTCGH F + C + + TC +C
Sbjct: 249 DIPFVCLICKKDYRSP---IATTCGHHFCEQCAITRYRKTPTCIQC 291
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 33.5 bits (73), Expect = 0.028
Identities = 18/89 (20%), Positives = 44/89 (49%)
Frame = +2
Query: 392 LNSITKQLEMFKKNYNDIEASNPMSRKEMQDLYTELKEFNADRIEDVELVVETLSTMLTE 571
LNS+ + L ++ I++S+ ++MQ + +E+ + + +E +E + ++T + +
Sbjct: 847 LNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISD-KRNELESLEELQHEVATRIEQ 905
Query: 572 YGRMNSSNEQKARCYQRRMAELKANVRTL 658
++N N K R E +++L
Sbjct: 906 DAKINERNAAKRSLLLARKKECNEKIKSL 934
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 33.1 bits (72), Expect = 0.037
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 68 LNMELTCSLCKKTTKQNEIIVTTTCGHIFHDDCIQESLKSSHTCPEC 208
++ EL C +C V + CGH F C+ ++L S CP C
Sbjct: 163 VSRELECQICFGMLYDP---VVSPCGHTFCGPCLMQALTQSPQCPTC 206
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 32.3 bits (70), Expect = 0.065
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +2
Query: 86 CSLCKKTTKQNEIIVTTTCGHIFHDDCIQESLKSSHTCPECHKPIKNESLLRLYLNVGDE 265
C +C + + C H +H CI+ +L SH C K L + GDE
Sbjct: 192 CCICLMPVLPCQALFVAPCSHSYHYKCIRPTLNESHPYFSCFICRKYHD-LEAPVEEGDE 250
Query: 266 SL 271
SL
Sbjct: 251 SL 252
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 31.9 bits (69), Expect = 0.085
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 86 CSLCKKTTKQN-EIIVTTTCGHIFHDDCIQESLKSS-HTCPEC 208
C +C + N E C H FH +CI + L SS ++CP C
Sbjct: 525 CLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLC 567
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 31.9 bits (69), Expect = 0.085
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +2
Query: 119 EIIVTTTCGHIFHDDCIQESL---KSSHTCPECHKPIKNESLLRLYLNVGDE 265
E + T CGHIF + CI +L ++ CP C + + ++ L + +G +
Sbjct: 214 ENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKVHPNKVICLEMMLGSQ 265
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 31.1 bits (67), Expect = 0.15
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 83 TCSLCKKTTKQNEII-VTTTCGHIFHDDCIQESLKS-SHTCPEC 208
+C +C +T +I C H FH CI + L + +++CP C
Sbjct: 765 SCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLC 808
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 31.1 bits (67), Expect = 0.15
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 83 TCSLCKKTTKQNEI-IVTTTCGHIFHDDCIQESLKSSHTCPECHKPIKNES 232
TC +C + + ++T C H FH C+Q+ SS CP C K +S
Sbjct: 207 TCVVCLERMDSSITGLITIVCQHTFHCPCLQKWGNSS--CPVCRYTQKVQS 255
Score = 25.0 bits (52), Expect = 9.8
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +2
Query: 386 DCLNSITKQLEMFKKNYNDIEASNPMSRKEMQDLYTELKEFNADRIEDVELVVETLSTML 565
D L ++ QLE K NY + ++ N +Q L + +D+I ++ + L+ L
Sbjct: 427 DKLKRVSSQLEHLKHNYEEEKSMNENLLVRIQTLEKQ-NTTKSDQIVSMQFQINDLNEQL 485
Query: 566 TE 571
+
Sbjct: 486 RD 487
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 30.7 bits (66), Expect = 0.20
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 86 CSLCKKTTKQNEIIVTTTCGHIFHDDCIQESLKS-SHTCPECHKPIKNESLLRLYL 250
CS+C ++ II + CGH F CIQ+ +++ CP C + ++ ++L
Sbjct: 627 CSVCNFERWKDRII--SLCGHGFCYQCIQKRIETRQRRCPICGRGFGASDVIPIHL 680
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 30.7 bits (66), Expect = 0.20
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 62 KILNMELTCSLCKKTTKQNEIIVTT-TCGHIFHDDCIQESLKSS 190
++ N CS+C T + I + TC H+FH CI++ K+S
Sbjct: 189 ELKNRLYECSVCTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNS 232
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 30.7 bits (66), Expect = 0.20
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 86 CSLCKKTTKQNEIIVTTTCGHIFHDDCIQESLKS-SHTCPECHK 214
C +C ++I+ C H+FH CI + + +CP C++
Sbjct: 205 CIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNE 248
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 29.9 bits (64), Expect = 0.34
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 134 TTCGHIFHDDCIQESLKSSHTCP--ECHKP 217
T C H++H C+ + +++ CP CH P
Sbjct: 645 TPCHHLYHRQCLLQWMETRSICPVCRCHLP 674
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 29.9 bits (64), Expect = 0.34
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 65 ILNMELTCSLCKKTTKQNEIIVTT-TCGHIFHDDCIQESLKSSHTCP 202
I+++ + C + E V TC H FH CI L + + CP
Sbjct: 48 IMDLCIECQANTDSAAAQECTVAWGTCNHAFHFHCISRWLNTRNVCP 94
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 29.1 bits (62), Expect = 0.60
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = +2
Query: 86 CSLCKKTTKQNEIIVTTTCG---HIFHDDCIQESLKSSHT--CPEC 208
C++C + CG H FH C+ + KSS++ CP C
Sbjct: 1558 CAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCPLC 1603
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 28.7 bits (61), Expect = 0.80
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +2
Query: 86 CSLCKKTTKQNEIIVTTTCGHIFHDDCIQESLKSSHTCPEC 208
CSLC + T CGHIF CI CP C
Sbjct: 256 CSLCMEFI---HCPAATECGHIFCWSCINGWTSKKSECPLC 293
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 28.7 bits (61), Expect = 0.80
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 80 LTCSLCKKTTKQNEIIVTTTCGHIFHDDCIQESLKSSHTCPECHKPIKNESL 235
L CSLC E+++ CGH +C+ + SS + K NE++
Sbjct: 744 LQCSLCMDVVA--ELLIIVPCGHFLCRECLTHVITSSE---DMAKQTSNENI 790
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 28.7 bits (61), Expect = 0.80
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 125 IVTTTCGHIFHDDCIQESLKSSHTCPEC 208
IV C HIFH CIQ L +S + +C
Sbjct: 47 IVWGKCKHIFHAHCIQNWLATSGSQGQC 74
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = +2
Query: 86 CSLCKKTTKQNEIIVT---TTCGHIFHDDCIQESLK--SSHTCPECHKPIK 223
C +C + + I T T CGH + CI LK ++ +CP C I+
Sbjct: 192 CMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLVNNVSCPICKHRIR 242
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +2
Query: 374 TSERDCLNSITKQLEMFKKNYNDIEASNPMSRKEMQDLYTELKEFNAD--RIEDVELVVE 547
+SE C + T Q + ++K + + + ++Q ++ E ++ A R+E++ VE
Sbjct: 207 SSEEACKSCYT-QAKTWEKKFREALRDSKEYAAQLQTIHEEYEQQQAHIVRMEELIHAVE 265
Query: 548 TLSTMLTEYGRMNSSNEQKAR 610
T+Y + S +EQK R
Sbjct: 266 KERKTETDYMKKESLSEQKER 286
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 27.5 bits (58), Expect = 1.8
Identities = 22/108 (20%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Frame = +2
Query: 359 WNRAITSERDCLNSITKQLEMFKKNYNDIEASNPMSRKEMQDLYTELKEFNADRIE---- 526
+ + + ER+ N+I+K+L+ + Y D E ++ D + +F +R +
Sbjct: 720 FQKELVEERERHNAISKRLQEIESLYRDRELLVTNLEDQLVDQTVTINKFAFERDQFRER 779
Query: 527 --DVELVVETLSTMLTEYGRMNSSNEQKARCYQRRMAELKANVRTLKS 664
E ++ L+ + +N S + R Q +EL + LK+
Sbjct: 780 SMGFENTIKDLTRKMEATDMLNVSLHESLRSVQTENSELVTEMALLKA 827
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = -2
Query: 506 ILLILYIDLAFLYDSLGLRLLYHCNFF*TSLIASLLNSNSHVLMLLLCSNLHILF 342
+ + YI L L++S ++ N+F T + +SLL + + L+C + +F
Sbjct: 687 VFCVFYISLIPLHNSDNSEIVLGNNYFTTLIFSSLLILACYAFVSLICMDPFFIF 741
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Frame = +2
Query: 65 ILNMELTCSLCKKTTKQNEIIVTTTCGHIFHDDCIQESL--KSSH----TCPEC 208
+LN C +CKK + + C +H DC+ L K H TC C
Sbjct: 255 LLNEPSNCKVCKKWCAFDFSVQCADCKKYYHMDCVVPPLLKKPPHGFGWTCATC 308
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 188 SHTCPECHKPIKNESLLRLYLN 253
S C CH P KN+ LLR ++N
Sbjct: 145 SFRCLCCHVPCKNKKLLREHMN 166
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 407 KQLEMFKKNYNDIEASNPMSRKEMQDLYTELKEFNADRIEDV 532
K+ +++ + A S +E +D +LKE DR+E+V
Sbjct: 162 KEESKLEEDLRNARAKYEESLEEFEDRMVQLKELEPDRVENV 203
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/62 (20%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +2
Query: 386 DCLNSITKQLEMFKKNYNDIEASNPMSRKEMQDLYTELKEFNAD----RIEDVELVVETL 553
D + + K + +K+ ++ +++N SRK + + +K NA+ R+ D++++ + +
Sbjct: 1040 DLVTASRKAVSAAEKDLSNDQSNNKSSRKALLITFKGVKNINAETLVQRLNDLDILYDAM 1099
Query: 554 ST 559
T
Sbjct: 1100 PT 1101
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 356 DWNRAITSERDCLNSITKQLEMFKKNYNDIEASNPMSRKEMQDLYTELKEFN 511
D +R ITS ++ + ++ NY S+ + ++++DL TE E N
Sbjct: 1060 DADRVITSLKEDIEKERSLMKECHSNYESEIVSHGRTTQKLRDLRTEFDEVN 1111
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 4.2
Identities = 21/98 (21%), Positives = 42/98 (42%)
Frame = +2
Query: 371 ITSERDCLNSITKQLEMFKKNYNDIEASNPMSRKEMQDLYTELKEFNADRIEDVELVVET 550
+ SERD L+ ++LE +N + S ++++ ELKE N + +
Sbjct: 334 LKSERDTLSIKNEKLEKLLRNTIGSLKDSRTSNSQLEEEMVELKESN----RTIHSQLTD 389
Query: 551 LSTMLTEYGRMNSSNEQKARCYQRRMAELKANVRTLKS 664
+ L+ + + N S + YQ ++ V+ + S
Sbjct: 390 AESKLSSFEQENKSLKGSIDEYQNNLSSKDKMVKQVSS 427
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 25.8 bits (54), Expect = 5.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 176 SLKSSHTCPECHKPIKNE 229
S ++H C CHKP+ E
Sbjct: 305 STNNNHLCDNCHKPVNCE 322
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 359 WNRAITSERDCLNSITKQLEMFKKNYNDIEASNPMSRKEMQDLYTELKEF 508
W + + + S+ QLE + + DI S ++Q T+LKE+
Sbjct: 648 WKSEESELKSSIESLISQLESIRNSQIDIAFSKNQLELKLQLYETKLKEY 697
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 581 MNSSNEQKARCYQRRMAELKANVRTLKS 664
+N+S +QK YQR++ ELK + K+
Sbjct: 113 LNNSIKQKQDEYQRKLEELKKEIEYAKT 140
>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +2
Query: 125 IVTTTCGHIFHDDCIQESLKSSHTCP 202
I++T C H + D I L + CP
Sbjct: 190 ILSTACNHFYEKDAILSLLNPTCVCP 215
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -1
Query: 174 SCIQSS*NICPHVVVTMISFCFVVFLQSEHVNSIFSIF*YILNKIK 37
+CI S N + + S F V + EH FS+F I+ K+K
Sbjct: 33 NCINSEYNGKVKISYSSSSQQFKVIVYEEHKREAFSLFEEIVQKLK 78
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 80 LTCSLCKKTTKQNEIIVTTTCGHIFHDDCIQE 175
++C+ C + IV C H+ H+DC +E
Sbjct: 1263 MSCTFCCLSI-HGLCIVCGLCLHVMHEDCYKE 1293
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 398 SITKQLEMFKKNYNDIEASNPMSRKEMQDLYTELKE 505
SI++ + + +Y+++ NP +KE++ L +E E
Sbjct: 27 SISELITLLDIHYSELFTKNPWMKKEVRKLASEFVE 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,426
Number of Sequences: 5004
Number of extensions: 46761
Number of successful extensions: 195
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -