Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9p21
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              24   1.5  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   5.9  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   5.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.9  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = -3

Query: 470 SWTCPYCGYCDH--HGLKKC 417
           ++TCP CG C    H +K C
Sbjct: 72  AYTCPICGACGDIAHTVKYC 91


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 601 SIIFKAFIEQSYNKYCKK 548
           S+ FK+ I +++   CKK
Sbjct: 60  SVFFKSHITEAFQTQCKK 77


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 601 SIIFKAFIEQSYNKYCKK 548
           S+ FK+ I +++   CKK
Sbjct: 60  SVFFKSHITEAFQTQCKK 77


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +2

Query: 329 IGHQMPINGLLNSSYNRIVHNTDMNDHNVH 418
           + ++  +N     S+  ++HN  +N  ++H
Sbjct: 558 VSNEQFLNTAATLSFCEMIHNAQVNKRSIH 587


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,665
Number of Sequences: 438
Number of extensions: 4406
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)