Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9p15
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346...    33   0.29 
12_01_0741 + 6649988-6653065                                           28   6.2  

>07_03_1523 +
           27432991-27433199,27433585-27434185,27434468-27434642,
           27434686-27436418,27436871-27437317
          Length = 1054

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 208 KAPKLFGWWFRRPTSWWSEIPCVFFAMFIIVRIY 107
           + P+   WW RR  S WS +  +    F ++R Y
Sbjct: 330 RKPRTCNWWPRRAISLWSPVVAILLLAFAVLRYY 363


>12_01_0741 + 6649988-6653065
          Length = 1025

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = -1

Query: 630 ILFSELFSKII-IRCLSIFVNLYIMFL*NNETIIVNH*VNYKKANSLSIYFVKLT*SAST 454
           +L S  F  I+ +   S   NLY++ L NN+ I+++   N    +  SI F++L  S S 
Sbjct: 460 LLHSNSFVGIVELTSYSKLQNLYVLNLSNNKLIVIDGENNSSLVSYPSISFLRLA-SCSI 518

Query: 453 TSYYN 439
           +S+ N
Sbjct: 519 SSFPN 523


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,357,153
Number of Sequences: 37544
Number of extensions: 265988
Number of successful extensions: 549
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)