Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9p03
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr ...    68   2e-12
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    55   9e-09
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    48   1e-06
SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz...    31   0.22 
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    27   3.5  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    27   3.5  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   8.1  

>SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 80

 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 34/55 (61%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
 Frame = +1

Query: 124 EVTDESDGCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTIHAFTQ-KTLT 285
           E+ D S GCG  F V+IVS  F+GK  LARHRLVN  LQE +K IHAFTQ +TL+
Sbjct: 21  EIQDMSGGCGQNFEVIIVSPLFEGKSTLARHRLVNHKLQEVIKDIHAFTQVRTLS 75


>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 25/55 (45%), Positives = 35/55 (63%)
 Frame = +1

Query: 127 VTDESDGCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTIHAFTQKTLTVD 291
           V D S GCG+ + V I S  F+GK  LA+HRLVN++L+EE++ +H     T   D
Sbjct: 51  VIDVSGGCGSMYQVAIKSKAFQGKNTLAQHRLVNSILKEEIRNMHGLNLSTEVED 105


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
 Frame = +2

Query: 458 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPAVHIHLPCV---DLQET 628
           VS+PGK IL GEH+VVYG TA+A ++ LRS   ++  N      V   +      +LQ  
Sbjct: 7   VSSPGKTILFGEHAVVYGATALAAAVSLRSYCKLQTTNNNEIVIVMSDIGTERRWNLQSL 66

Query: 629 IPLEPTVKSLFHPKLAPGI 685
                TV+++ HP  +P +
Sbjct: 67  PWQHVTVENVQHPASSPNL 85


>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
           Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +1

Query: 160 FSVLIVSDKFKGKPLLARHRLVNTLLQEE 246
           F + IVS +F G   +ARHRLV  LL++E
Sbjct: 54  FRLEIVSPEFSGMSRVARHRLVYGLLKDE 82


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 647 LSAPMEWSPVDPRTANVCGLLVRVECLLPLSLW 549
           L  P+     DPR   +  L    EC LP S+W
Sbjct: 179 LHRPLSAQSTDPRPTRIFVLGATKECSLPPSIW 211


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +1

Query: 220 LVNTLLQEELKTIHAFTQKTLTVDQWKTQ*CILFNTMQ*SKSISFLLFIIPCLRSSQFRV 399
           LV  +L++ELK +       + +    TQ   L   ++ +  + F++F++P  +  Q   
Sbjct: 287 LVKQILEKELKELPVACYSIINLHDSLTQFPNLDFILKTTALVLFIIFLVPSFKKLQNEE 346

Query: 400 CLLH 411
            +LH
Sbjct: 347 SILH 350


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
 Frame = -2

Query: 273 LGERVDCLQFLLKQCVHQSMPGKKRFPFELVRYYEN------RKLGAASVALICHLLNRA 112
           L + +D +   L   VH   P  +  P  +VR +++      R L   S  LIC  +++ 
Sbjct: 620 LADNIDIVTIFLS-LVHPPSPAGELHP--IVRLFQDIWPILSRTLDTFSDVLICERISKL 676

Query: 111 LSNFLNT 91
           L NF+ T
Sbjct: 677 LKNFIYT 683


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,823
Number of Sequences: 5004
Number of extensions: 65675
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)