Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9p03
(715 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-10|CAC48129.1| 106|Caenorhabditis elegans Hypothetical... 56 2e-08
AC006762-4|AAU20835.1| 484|Caenorhabditis elegans Hypothetical ... 55 6e-08
AC006762-3|AAU20834.1| 614|Caenorhabditis elegans Hypothetical ... 55 6e-08
AC006762-2|AAF60558.2| 607|Caenorhabditis elegans Hypothetical ... 55 6e-08
AC006762-1|AAU87813.1| 514|Caenorhabditis elegans Hypothetical ... 55 6e-08
Z81120-6|CAH10814.1| 98|Caenorhabditis elegans Hypothetical pr... 52 4e-07
U88168-2|AAC24398.1| 108|Caenorhabditis elegans Hypothetical pr... 49 3e-06
U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical pr... 28 5.8
U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical pr... 28 5.8
>AL132876-10|CAC48129.1| 106|Caenorhabditis elegans Hypothetical
protein Y105E8A.11 protein.
Length = 106
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/56 (42%), Positives = 39/56 (69%)
Frame = +1
Query: 112 CSIEEVTDESDGCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTIHAFTQKT 279
C+ EV D S+GCG+ F V++ + FKGK +A+H+ V ++L+E++K +H T KT
Sbjct: 48 CTRVEVHDVSNGCGSMFDVVVEAAGFKGKSKVAQHKQVTSILREQIKDMHGLTIKT 103
>AC006762-4|AAU20835.1| 484|Caenorhabditis elegans Hypothetical
protein Y42G9A.4c protein.
Length = 484
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/66 (42%), Positives = 46/66 (69%)
Frame = +2
Query: 458 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPAVHIHLPCVDLQETIPL 637
VSAPGK+IL GEH+VVYG+TAIA S+ LR+ + + T + +++ LP + +++T L
Sbjct: 14 VSAPGKIILFGEHAVVYGRTAIAGSIDLRTYV---SLYTSADGRIYLSLPDLGVEKTWML 70
Query: 638 EPTVKS 655
+ +K+
Sbjct: 71 KDLLKA 76
>AC006762-3|AAU20834.1| 614|Caenorhabditis elegans Hypothetical
protein Y42G9A.4b protein.
Length = 614
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/66 (42%), Positives = 46/66 (69%)
Frame = +2
Query: 458 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPAVHIHLPCVDLQETIPL 637
VSAPGK+IL GEH+VVYG+TAIA S+ LR+ + + T + +++ LP + +++T L
Sbjct: 144 VSAPGKIILFGEHAVVYGRTAIAGSIDLRTYV---SLYTSADGRIYLSLPDLGVEKTWML 200
Query: 638 EPTVKS 655
+ +K+
Sbjct: 201 KDLLKA 206
>AC006762-2|AAF60558.2| 607|Caenorhabditis elegans Hypothetical
protein Y42G9A.4a protein.
Length = 607
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/66 (42%), Positives = 46/66 (69%)
Frame = +2
Query: 458 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPAVHIHLPCVDLQETIPL 637
VSAPGK+IL GEH+VVYG+TAIA S+ LR+ + + T + +++ LP + +++T L
Sbjct: 44 VSAPGKIILFGEHAVVYGRTAIAGSIDLRTYV---SLYTSADGRIYLSLPDLGVEKTWML 100
Query: 638 EPTVKS 655
+ +K+
Sbjct: 101 KDLLKA 106
>AC006762-1|AAU87813.1| 514|Caenorhabditis elegans Hypothetical
protein Y42G9A.4d protein.
Length = 514
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/66 (42%), Positives = 46/66 (69%)
Frame = +2
Query: 458 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPAVHIHLPCVDLQETIPL 637
VSAPGK+IL GEH+VVYG+TAIA S+ LR+ + + T + +++ LP + +++T L
Sbjct: 44 VSAPGKIILFGEHAVVYGRTAIAGSIDLRTYV---SLYTSADGRIYLSLPDLGVEKTWML 100
Query: 638 EPTVKS 655
+ +K+
Sbjct: 101 KDLLKA 106
>Z81120-6|CAH10814.1| 98|Caenorhabditis elegans Hypothetical
protein T12D8.10 protein.
Length = 98
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 109 KCSIEEVTDESDGC-GAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTIHAFTQKTLT 285
K I +V DES GC G KF +LIVS+ F+GK L HRLV L + HA T T
Sbjct: 17 KPQILKVVDESGGCDGYKFRLLIVSEAFEGKCTLQSHRLVQAALAPIMDETHALTICAYT 76
Query: 286 VDQW 297
++W
Sbjct: 77 PERW 80
>U88168-2|AAC24398.1| 108|Caenorhabditis elegans Hypothetical
protein K11H12.1 protein.
Length = 108
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +1
Query: 145 GCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEEL-KTIHAFTQKTLTVDQWKTQ 306
G F V +VSD+F+GK ++ RHRLVNT L +EL T+HA + +W Q
Sbjct: 40 GAEKHFRVQVVSDEFEGKRVIERHRLVNTCLAKELATTVHALRIDAIPTSKWDGQ 94
>U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical
protein F26B1.2c protein.
Length = 380
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 267 ERVDCLQFLLKQCVHQSMPGKKRF 196
+++ Q+LL+QCV S G++RF
Sbjct: 353 QQIHSAQYLLQQCVRNSTQGRERF 376
>U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical
protein F26B1.2a protein.
Length = 397
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 267 ERVDCLQFLLKQCVHQSMPGKKRF 196
+++ Q+LL+QCV S G++RF
Sbjct: 370 QQIHSAQYLLQQCVRNSTQGRERF 393
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,190,136
Number of Sequences: 27780
Number of extensions: 375965
Number of successful extensions: 1039
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -