Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9p01
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 255 5e-69
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 156 3e-39
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 69 8e-13
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 53 3e-08
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 40 3e-04
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 29 0.64
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 28 1.5
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 27 2.6
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 26 5.9
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 5.9
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ... 25 7.8
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 25 7.8
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 7.8
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 255 bits (624), Expect = 5e-69
Identities = 116/207 (56%), Positives = 165/207 (79%), Gaps = 1/207 (0%)
Frame = +3
Query: 78 SSAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEE-GMLTPLLQTSECTFAYIK 254
+SAI++L++KGKV+ISR+YR D+ + V++KF+PL E EEE G TP L + YI
Sbjct: 2 ASAIFVLNLKGKVIISRDYRADIPMSVVEKFLPLKSEVEEEQGFSTPCLTHEGINYIYIH 61
Query: 255 TNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFG 434
N++Y+++ +K N++ + VFL K+ +V +YFKEL+EESIRDNFV++YELLDE++DFG
Sbjct: 62 HNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEIMDFG 121
Query: 435 YPQTTDSKILQEYITQEGHKLEMQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNLL 614
+PQTT++KILQEYITQ + ++ P+A+TNA+SWRSEGI YRKNEVFLDVIESVNL+
Sbjct: 122 FPQTTETKILQEYITQTSNTVKKHAPPPIAMTNAISWRSEGIHYRKNEVFLDVIESVNLI 181
Query: 615 ANSNGNVLRSEIVGAIKMRVYLSGMPE 695
A ++G V++SEI+G ++++ YLSGMPE
Sbjct: 182 AAADGTVIQSEILGKVRLKCYLSGMPE 208
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 156 bits (378), Expect = 3e-39
Identities = 77/218 (35%), Positives = 125/218 (57%), Gaps = 13/218 (5%)
Frame = +3
Query: 81 SAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYIKTN 260
S ++I ++KG LI + +R D+ V + F ++ + P++ T+ Y K
Sbjct: 3 SGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAILTNTD--YRHPIVSIGSSTYIYTKHE 60
Query: 261 NLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGYP 440
+LY+V+ TK N N+ +V FL +++ +T YF +L E +++DN I+ELLDE+ID+G
Sbjct: 61 DLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMIDYGII 120
Query: 441 QTTDSKILQEYIT-------------QEGHKLEMQPKIPMAVTNAVSWRSEGIKYRKNEV 581
QTT+ L ++ + H ++ + +V WR GIKYRKN +
Sbjct: 121 QTTEPDALARSVSITAVKKKGNALSLKRSHSSQLAHTTSSEIPGSVPWRRAGIKYRKNSI 180
Query: 582 FLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPE 695
++D++E +NLL +S GNVLRS++ G +KMR LSGMPE
Sbjct: 181 YIDIVERMNLLISSTGNVLRSDVSGVVKMRAMLSGMPE 218
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 68.5 bits (160), Expect = 8e-13
Identities = 48/211 (22%), Positives = 90/211 (42%), Gaps = 8/211 (3%)
Frame = +3
Query: 84 AIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSE--CTFAYIKT 257
AIY++D G +L+ RG ++ L + P + ++ F ++
Sbjct: 6 AIYLVDTNGALLLQLESRGRTSPITLEHIKNELFRYKLRNEEPPFILHNKNFLIFQELEE 65
Query: 258 NNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGY 437
+ + TT + + + +IV+V+ +F + N VI +LL E+ID+GY
Sbjct: 66 DVRLCIPTTCDTEPL-YIHDIMRRIVDVVKTFFGGFNASKVEKNVCVIVQLLAEMIDYGY 124
Query: 438 PQTTDSKILQEYITQEGHKLE------MQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIE 599
+ LQ+ + + +Q P + V WR+ KY NE F+ V+E
Sbjct: 125 ATCMEPNALQDIVPLPSFMNKFMAVTGLQTNTPTLARDTVPWRTAKAKYATNEFFIHVLE 184
Query: 600 SVNLLANSNGNVLRSEIVGAIKMRVYLSGMP 692
V+ + NG + + ++ + +SGMP
Sbjct: 185 RVSAVYQPNGKLAFGTVKSDMECKCQISGMP 215
>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 240
Score = 53.2 bits (122), Expect = 3e-08
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 3/144 (2%)
Frame = +3
Query: 84 AIYILDVKGKVLISRNYRGDVDLGV---IDKFMPLLMEKEEEGMLTPLLQTSECTFAYIK 254
A+ I++ GK +ISR +R + V + F L+ EK + +++ F Y
Sbjct: 5 AVSIVNRGGKAIISRQFREMSRVRVESLLSSFPALVSEKSQN----TTVESDNVRFVYQP 60
Query: 255 TNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFG 434
+ LYIV T +NI L+ + +V+T LEE I + I+ DE G
Sbjct: 61 LDELYIVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLG 120
Query: 435 YPQTTDSKILQEYITQEGHKLEMQ 506
Y ++ Y+ E H+ ++Q
Sbjct: 121 YRDNVSLTQIKTYLEMESHEEKIQ 144
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 40.3 bits (90), Expect = 3e-04
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Frame = -2
Query: 373 SSSNSLKYSVITSTILYKNTNTSAILAFFFVVDTMYKLLVLI*ANVHSLVCNKGVNIPSS 194
S S ++ T TI T+TS+I+ + V+T+Y+ + + + S++ N I S
Sbjct: 336 SLSTEVEVEYFTKTI----TDTSSIVTYSTGVETLYETETITSSEISSIIYNFSTPISGS 391
Query: 193 SFSIS-KGMNLSITPRSTSPR*FLEMRTLPLTSSMYIAEEDMVKQFLKLYFRLILHFTIV 17
SF K +N + P TS + TLP +S M V + F +I FT
Sbjct: 392 SFPDGFKPINPTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVSNNTQSSFLIISTFTSS 451
Query: 16 Y 14
Y
Sbjct: 452 Y 452
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 29.1 bits (62), Expect = 0.64
Identities = 20/99 (20%), Positives = 39/99 (39%)
Frame = +3
Query: 180 LMEKEEEGMLTPLLQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFK 359
L+ + + L+ Y + LY N + ++ VE++ +F
Sbjct: 38 LISQRNQKFQANFLEWENSKLVYRRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFG 97
Query: 360 ELEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYI 476
+ E + NF + +LDE+I G ++ K + E I
Sbjct: 98 NVCELDLIFNFYKVSAILDEIILGGEIGESNKKSVLERI 136
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 579 LHSFYILCLRTSTTQHW*LPWVFWAAFQVYD 487
+H FY L +T Q W P++FW +D
Sbjct: 423 IHIFYFLFFHVATIQQW--PFLFWLPSTKFD 451
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 213 PLLQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKIV 335
P+L TS F I+ +Y+ +A FVFLYK++
Sbjct: 342 PILFTSVYHFTIIENGLVYLGILVGALITLACYFVFLYKVM 382
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 376 LSSSNSLKYSVITSTILYKNTNT-SAILAFFFVVDTMYKLLVL 251
++ SN Y +I + KNT +A+++FF + T YK L L
Sbjct: 794 INFSNCFTYWIINCILEKKNTKARTAVISFF--IQTAYKCLSL 834
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 369 EESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLE 500
E SI VV ELL+ L ++ DS + Y+T G L+
Sbjct: 66 ETSIMKLLVVTKELLESLTNWSKGTVNDSAVSSVYVTLIGEFLQ 109
>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 400
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 384 DNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLEMQ 506
DN + +++ L E+ G + S L+ Y+ +G +E+Q
Sbjct: 59 DNLISLHKSLVEIESLGGNEVNVSDFLKSYLESKGLTVELQ 99
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 214 GVNIPSSSFSISKGMNLSITPRSTSPR*FLEM 119
G I S+ FS+ + + L+ RS SPR FLE+
Sbjct: 119 GGKITSAFFSLLQSVLLNHGQRSISPRNFLEI 150
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 359 FEVLSHNFNNFVQEYKHKCNISIF 288
FE L+ NF+NFV+ +++ N+ F
Sbjct: 4269 FEKLTFNFSNFVKYRQYQINLKDF 4292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,998
Number of Sequences: 5004
Number of extensions: 61147
Number of successful extensions: 188
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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