Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9o23
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0108 - 20912236-20912364,20912470-20912601,20912718-209130...    32   0.37 
12_01_0778 + 7111562-7112152,7113034-7113157,7113252-7113395,711...    28   7.9  
07_03_1514 + 27345704-27345847,27346677-27346810,27346948-27346999     28   7.9  
04_03_0899 + 20662671-20662818,20663655-20663959,20664080-206642...    28   7.9  
03_06_0394 + 33592780-33593310,33593890-33594013,33594233-335943...    28   7.9  

>09_06_0108 -
           20912236-20912364,20912470-20912601,20912718-20913071,
           20913161-20913407,20913489-20913565,20913971-20914045,
           20914118-20914219,20914329-20914447,20914861-20914984,
           20915081-20915131,20915247-20915345,20915839-20915949
          Length = 539

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +2

Query: 170 ILAFTMAGFPVKLGTILSFILVFYAIYYRKTDIGDVRLSPVKEH 301
           +L F+  GF    G ++ +   ++ IY++ TD+ DV++ P+ E+
Sbjct: 7   VLGFSGFGFGFSAGIVIGY---YFFIYFQPTDVKDVKVRPLVEY 47


>12_01_0778 +
           7111562-7112152,7113034-7113157,7113252-7113395,
           7113485-7113630,7113716-7113838,7113922-7114089,
           7114253-7114474,7114572-7114745
          Length = 563

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 407 LLDHRELIGVPEHFDEITTKEEFLKSFTYFFKHGA 511
           +LD +E + V  H  +I + E   K F++F K+G+
Sbjct: 440 ILDCKEFVTVSIHLKKIRSDEHLPKVFSFFDKNGS 474


>07_03_1514 + 27345704-27345847,27346677-27346810,27346948-27346999
          Length = 109

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/67 (29%), Positives = 25/67 (37%)
 Frame = +2

Query: 263 DIGDVRLSPVKEHLLSLENENRVKTGNMQPRVALGYGACHDLFVNATLLLDHRELIGVPE 442
           D G  RLS V E     E  N   TG + PR     G     +    LL  +  ++   E
Sbjct: 19  DCGQERLSKVDEGKADSEGGNHQSTGFLGPRTGNAIGTLAFTWATVVLLGGYPSVLRPDE 78

Query: 443 HFDEITT 463
            F   TT
Sbjct: 79  DFLYATT 85


>04_03_0899 +
           20662671-20662818,20663655-20663959,20664080-20664265,
           20665200-20665274,20665596-20665652
          Length = 256

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -1

Query: 501 LKKYVKLLRNSSLVVISSKCSGTPINSRWSNNNVAFTKRSWHAP 370
           L+K V+    + ++ +  +CSG  + S W    V      WH P
Sbjct: 185 LRKKVENELGTKMIHLKMRCSG--VGSEWGKRPVVLPIEHWHTP 226


>03_06_0394 +
           33592780-33593310,33593890-33594013,33594233-33594376,
           33594463-33594615,33594973-33595088,33595253-33595420,
           33595514-33595744,33596229-33596378
          Length = 538

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 407 LLDHRELIGVPEHFDEITTKEEFLKSFTYF 496
           +LD++E + V  H  +I   E   K+F+YF
Sbjct: 420 ILDYQEFVAVSIHVRKIGNDEHIQKAFSYF 449


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,950,001
Number of Sequences: 37544
Number of extensions: 362706
Number of successful extensions: 781
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)