Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9o13
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    45   1e-05
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    42   1e-04
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    41   1e-04
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    38   0.001
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    37   0.002
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.60 
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    27   1.8  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    26   5.6  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    25   7.4  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   9.8  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   9.8  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    25   9.8  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
 Frame = +3

Query: 237  SIVDEKDCAESYEIILLYNNRI-QSLPNFLNRFCNLKILNVSNNRLTVLPD-VFKN-CPL 407
            S+  ++    + E + L +NR+       L  F  LK+LN+S N LT +P   F+N   L
Sbjct: 797  SLSSQEFVMPTVEELYLVDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPSKFFQNFSDL 856

Query: 408  TTLVAKHNQLTNESLPKSFYTAKNTLRELNLSGNQLNLFPEQIFELTHLKYLYLGSNKIV 587
              L    N+L N S+     TA+  L  L  +GN+L+ FP+       L++L + +N + 
Sbjct: 857  KHLFVSGNELANLSISS---TAQVLLETLYANGNRLSSFPKNEALSKSLRFLDISTNNLQ 913

Query: 588  NI 593
            N+
Sbjct: 914  NL 915



 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
 Frame = +3

Query: 336 NLKILNVSNNRLTVLPDVFKN-CPLTTLVAKHNQLTNESLPKSFYTAKNTLRELNLSGNQ 512
           +LK LN++NN+L  LP   +    LT L   +N      L     T  + L  LN S N 
Sbjct: 503 SLKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNFVTFPL---IITELSQLETLNFSHNL 559

Query: 513 LNLFPEQIFELTHLKYLYLGSNKIVN-IPKDIWKLSGCVSI 632
           L+    +I  L  LK+LYL  N + N +P++I  L    +I
Sbjct: 560 LSQISSKIGSLVKLKHLYLQFNDLSNRLPQEIGLLKNLETI 600



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
 Frame = +3

Query: 291 NNRIQSLPNFLNRFCNLKILNVSNNRLTVLPDVFKN-CPLTTLVAKHNQLTNESLPKSFY 467
           NN++  LP+      NL  L++S N     P +      L TL   HN L+  S   S  
Sbjct: 511 NNKLFFLPHSTRYLVNLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQIS---SKI 567

Query: 468 TAKNTLRELNLSGNQL-NLFPEQIFELTHLKYLYLGSNKIVNI 593
            +   L+ L L  N L N  P++I  L +L+ + L  N I NI
Sbjct: 568 GSLVKLKHLYLQFNDLSNRLPQEIGLLKNLETIDLSYNAITNI 610



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
 Frame = +3

Query: 162  DFREQKTLDLSNQMIDTLSISAE--------MRSIVDEKDCAESYEIILLYNNRIQSLPN 317
            D    K + L + +I+TL ++ E          SI D     ++ + +   N  +  +  
Sbjct: 665  DISHAKLIGLKDSVIETL-VNVETVKVNYNHFTSISDAISAMQNLKYLSCTNCEMSYVSP 723

Query: 318  FLNRFCNLKILNVSNNRLTVLPD-VFKNCPLTTLVAKHNQLTNESLPKSFYTAKNTLREL 494
             L +  +L  L++  N + + P+ V++   L  +    N L    LP +  T+K   R +
Sbjct: 724  NLGKLKHLVHLDLHANNIKIFPEEVWQVSSLKVVNLSSNILEKIKLPVA--TSKKLTRTI 781

Query: 495  N-------LSGNQLNLFPEQIFELTHLKYLYLGSNKIVN 590
            +       LSGN ++    Q F +  ++ LYL  N++ N
Sbjct: 782  SQLKIMRTLSGNPVSSLSSQEFVMPTVEELYLVDNRLGN 820


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +3

Query: 264 ESYEIILLYNNRIQSLPNFLNRFCNLKILNVSNNRLTVLPDVFKNCP-LTTLVAKHNQL 437
           ES EI+ +  N+I+ LP       NLK+L++S NRL  LP    + P L  L  ++N +
Sbjct: 98  ESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELPTYIAHMPNLEILKIENNHI 156



 Score = 33.5 bits (73), Expect = 0.028
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 483 LRELNLSGNQLNLFPEQIFELTHLKYLYLGSNKIVNIPKDIWKL 614
           LR LN+  N L  FPE +  L  L+ L +  NKI  +P+    L
Sbjct: 77  LRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQLPESFGAL 120



 Score = 31.5 bits (68), Expect = 0.11
 Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 198 QMIDTLSISA-EMRSIVDEKDCAESYEIILLYNNRIQSLPNFLNRFCNLKILNVSNNRLT 374
           + ++ L IS  +++ + +      + +++ +  NR+  LP ++    NL+IL + NN + 
Sbjct: 98  ESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELPTYIAHMPNLEILKIENNHIV 157

Query: 375 VLPDVFKN 398
             P    N
Sbjct: 158 FPPPHIAN 165


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 30/80 (37%), Positives = 39/80 (48%)
 Frame = +3

Query: 375 VLPDVFKNCPLTTLVAKHNQLTNESLPKSFYTAKNTLRELNLSGNQLNLFPEQIFELTHL 554
           V  D+FK   LT L   HN LT   LP      KN L  L+ SGN +   P ++  LT L
Sbjct: 173 VSTDLFKFSFLTELYINHNNLTR--LPPEIGKLKN-LVILDASGNSIKTIPPELGLLTEL 229

Query: 555 KYLYLGSNKIVNIPKDIWKL 614
           + + L  N I  IP ++  L
Sbjct: 230 REVLLFDNMISVIPAELGTL 249


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = +3

Query: 444 ESLPKSFYTAKNTLRELNLSGNQLNLFPEQIFELTHLKYLYLGSNKI 584
           +S+PK+ + +  +L  L+LSGN+L   P  + EL  L  L L SNKI
Sbjct: 345 KSIPKNVFLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKI 391


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 31/113 (27%), Positives = 53/113 (46%)
 Frame = +3

Query: 291  NNRIQSLPNFLNRFCNLKILNVSNNRLTVLPDVFKNCPLTTLVAKHNQLTNESLPKSFYT 470
            NNRI+ L    +    L+ L + NN +  + ++     L  L   +N+LTN    +    
Sbjct: 721  NNRIKELSFTNSNLHRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNLKASQPMI- 779

Query: 471  AKNTLRELNLSGNQLNLFPEQIFELTHLKYLYLGSNKIVNIPKDIWKLSGCVS 629
                LR L +S N ++    ++ +  HL+ LY+  N+  N P DI +L   V+
Sbjct: 780  ---HLRILRISNNAIHQL--EVDQFPHLRTLYMDLNRF-NRPPDIRRLKRLVN 826



 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +3

Query: 177  KTLDLSNQMIDTLSISAEMRSIVDEKDCAESYEIILLYNNRIQSLPNFLNRFCNLKILNV 356
            K +  S   +  L +S    S ++     +    + L  NRI+ + N  +   NLK LNV
Sbjct: 884  KYIATSMPNLRVLDLSHNYISDIESLKPLQMIHRLYLVGNRIKKMRNLCDILANLKQLNV 943

Query: 357  SNNRLTVL 380
             + R+  L
Sbjct: 944  LDLRMNPL 951


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
 Frame = +3

Query: 252 KDCAESYEIILLYNNRIQSLPNFLNRFCNLKILNVSNNRLTVLPDVFKNCPLTTLVAK-- 425
           +DC +S +   ++   ++S+   +N+  N K+ +   N+L  L + F N  + +++ +  
Sbjct: 320 RDCLDSLKDCRIH--LLESMLKLINKKENPKLRDYGMNKLVSLIESFNNITMESVLTECL 377

Query: 426 HNQLTNESLPKSFYTAKNTLRELN 497
           ++  T  S   +F +  N L ELN
Sbjct: 378 NDWSTTWSSVSTFASEDNKLEELN 401


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 1/155 (0%)
 Frame = +3

Query: 75  STLYTTPDDQSPNALQHKMEYYTSDSCDSDFREQKTLDLSNQMIDTLSISAEMRSIVDEK 254
           +T  TTP +  P++++HK      +   +D   Q   ++ N++ D   +S   R++VD  
Sbjct: 405 ATASTTPSEPPPSSIKHKTLQEILNKWSTDLTTQ--TEVFNKLCD--QVSDWDRTLVD-- 458

Query: 255 DCAESYEIILLYNNRIQSLPNFLNRFCN-LKILNVSNNRLTVLPDVFKNCPLTTLVAKHN 431
                  I  LY   +++     NR  + L+ ++ S   L  L D ++   L T   +  
Sbjct: 459 ---NGALISKLYTETVEA-EQMSNRIDDGLEYVSSSQQELFKLLDSYET-QLETFDGRAT 513

Query: 432 QLTNESLPKSFYTAKNTLRELNLSGNQLNLFPEQI 536
              N    ++F  A + L  L+  G  L     Q+
Sbjct: 514 SALNVERERAFGVADDILSRLDRLGEDLGTVINQM 548


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/60 (26%), Positives = 23/60 (38%)
 Frame = +3

Query: 336 NLKILNVSNNRLTVLPDVFKNCPLTTLVAKHNQLTNESLPKSFYTAKNTLRELNLSGNQL 515
           NL   N   NR  + P   +  PL           N+      YT   ++ +LNL  N+L
Sbjct: 184 NLNAKNYEENREPMSPSPQEALPLMPSSPPSQDYQNDQNHLILYTNSESIPKLNLRSNEL 243


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 327 RFCNLKILNVSNNRLTVLPDV 389
           +FC ++ LNV N +L V+ DV
Sbjct: 258 KFCTVESLNVPNRKLRVVCDV 278


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 435  LTNESLPKSFYTAKNTLRELNLSGNQLNLF 524
            L + +LP S  + +N +  LN+ GN+  LF
Sbjct: 1109 LASPNLPPSINSNRNNVFYLNIPGNECYLF 1138


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +3

Query: 336 NLKILNVSNNRLTVLPDVFKNCPLTTLVAKHNQLTNESLPKSFYTAKNTLRELNLSGNQL 515
           NL+IL+VSNN +  L  +     L  L A +N+L++    +   +    L  +   GN L
Sbjct: 238 NLEILDVSNNMIKHLSYLAGLKNLVELWASNNELSSFQEIEDELSGLKKLETVYFEGNPL 297


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 288 TVILSRSFQHNLFHPLYFSFQQRYLMYL 205
           T+++S +  + LF+P  ++   R L+YL
Sbjct: 292 TLMISHNLDYPLFYPKLYALLDRNLLYL 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,129
Number of Sequences: 5004
Number of extensions: 50472
Number of successful extensions: 153
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)