Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9o13
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    48   8e-08
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   1.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.6  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   6.0  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   6.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 48.0 bits (109), Expect = 8e-08
 Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 6/147 (4%)
 Frame = +3

Query: 168 REQKTLDLSNQMIDTLSISAEMRSIVDEKDCAESY--EIILLYNNRIQSLPN--FLNRFC 335
           R  +T  L    +  L++S  M + +D +   + +  +I+ L NN I  + +  FL  + 
Sbjct: 325 RVDETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLY- 383

Query: 336 NLKILNVSNNRL-TVLPDVFKNC-PLTTLVAKHNQLTNESLPKSFYTAKNTLRELNLSGN 509
           NL  L +S+N+L TV   +F     L  L    N + +   P +F    + L+EL+LSGN
Sbjct: 384 NLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASID-PLAFRNCSD-LKELDLSGN 441

Query: 510 QLNLFPEQIFELTHLKYLYLGSNKIVN 590
           +L   P+ + +L  LK L LG N+I N
Sbjct: 442 ELTSVPDALRDLALLKTLDLGENRISN 468



 Score = 37.9 bits (84), Expect = 9e-05
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
 Frame = +3

Query: 246 DEKDCAESYEIILLYNNRIQSLPNF--LNRFCNLKILNVSNNRLT-VLPDVFKNCP-LTT 413
           DE  C     I+ L  N I  L     L     L+ L++  N +  +  D       L T
Sbjct: 206 DESSCRADIRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRT 265

Query: 414 LVAKHNQLTNESLPKSFYTAKNTLRELNLSGNQLNLFPEQIF-ELTHLKYLYLGSNKI 584
             A +N L  +SLP+  + +   LRE++L+ N L   P+ IF  L  L  L L  N++
Sbjct: 266 FNASYNSL--DSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRL 321


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/57 (22%), Positives = 24/57 (42%)
 Frame = +3

Query: 132 EYYTSDSCDSDFREQKTLDLSNQMIDTLSISAEMRSIVDEKDCAESYEIILLYNNRI 302
           EY  + +  ++F+      L   M DT++  AE      +    E  + + + NN I
Sbjct: 155 EYQMNGNNITNFKNSNIFQLKQHMRDTMNKIAETLDEDTKNKLIEESKTVFILNNEI 211


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = +3

Query: 381 PDVFKNCPLTTLVAKHNQLTNES 449
           P++ K+C     +A+H ++  +S
Sbjct: 482 PEIHKSCICVRFIAEHTKMLEDS 504


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = +3

Query: 381 PDVFKNCPLTTLVAKHNQLTNES 449
           P++ K+C     +A+H ++  +S
Sbjct: 482 PEIHKSCICVRFIAEHTKMLEDS 504


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 290  QQQNTITSKFPKQVLQLENFECEQQQ 367
            QQQ  +T++  K +LQ  N + +  Q
Sbjct: 986  QQQTIVTNQAGKSILQTANIKQQSPQ 1011


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 288 TVILSRSFQHNLFHPLYFS 232
           T+ L R+F  N  HP  FS
Sbjct: 27  TMYLVRAFCRNCIHPTVFS 45


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 360 NNRLTVLPDVFKNCPLTTLVAKHNQLTNE 446
           N+RL + P    NC L  L    N L  E
Sbjct: 208 NSRLALKPKDVSNCVLFALQTPDNVLIKE 236


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 288 TVILSRSFQHNLFHPLYFS 232
           T+ L R+F  N  HP  FS
Sbjct: 475 TMYLVRAFCRNCIHPTVFS 493


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,398
Number of Sequences: 438
Number of extensions: 3185
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)