Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9n21
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 263 2e-71
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 85 7e-18
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 57 3e-09
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 55 8e-09
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 53 4e-08
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 40 4e-04
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.20
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 29 0.45
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 29 0.79
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 27 2.4
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.2
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 26 5.6
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 5.6
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 26 5.6
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 5.6
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 25 9.7
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 9.7
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 25 9.7
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 263 bits (644), Expect = 2e-71
Identities = 119/169 (70%), Positives = 153/169 (90%), Gaps = 1/169 (0%)
Frame = +1
Query: 160 YEPPIPTRVGKKKRKAK-GPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQE 336
YEPP+PTR G++K+KA+ GPDA+ KLP V P TRCRL+LLK++RI D+LLMEEE+++NQE
Sbjct: 31 YEPPVPTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQE 90
Query: 337 RLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQ 516
RLKPQ+E+ +EER++VD++RGTPMSVG LEEIIDD+HAIVST+ G E+YVSI+SFVDKD
Sbjct: 91 RLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTA-GPEYYVSIMSFVDKDM 149
Query: 517 LEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETYADIGGLDT 663
LEPGCSVLL+HK ++VG+L DDTDPM++VMKL+KAP E+YADIGGL++
Sbjct: 150 LEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLES 198
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 85.4 bits (202), Expect = 7e-18
Identities = 44/127 (34%), Positives = 76/127 (59%)
Frame = +1
Query: 280 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVS 459
LER + L ++E FI+ E K + ++ + +V ++ P+ +G E ID N AIV
Sbjct: 16 LERQLEMLDLQEGFIK--EDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVG 73
Query: 460 TSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETY 639
++ GS + V ILS +D++ L+P SV L +A+V +L + D +S+++ ++ P +Y
Sbjct: 74 STTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSY 133
Query: 640 ADIGGLD 660
AD+GGLD
Sbjct: 134 ADVGGLD 140
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 56.8 bits (131), Expect = 3e-09
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 21/142 (14%)
Frame = +1
Query: 295 DYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIID------------ 438
D +M+ EF R EKI+E + K+ + + P VGN+ EI+D
Sbjct: 49 DIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILDMQPDEVDVQESA 108
Query: 439 ---------DNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTD 591
A++ TS ++ ++ V+ ++L PG + +N + ++ L + D
Sbjct: 109 NQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYD 168
Query: 592 PMVSVMKLEKAPQETYADIGGL 657
V M++++ P E Y+DIGGL
Sbjct: 169 SRVKAMEVDEKPTERYSDIGGL 190
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 55.2 bits (127), Expect = 8e-09
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Frame = +1
Query: 283 ERIKDYLLMEEEFIRNQERLKPQEEKIEEE----RSKVDDLRGTPMSVGNLEEIIDDNHA 450
++I+D L + +N RL+ Q + R ++ L+ VG + + + N
Sbjct: 22 QKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKV 81
Query: 451 IVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQ 630
+V ++ V I +D +++P V L + + ++ +L + DP+VS+M +EK P
Sbjct: 82 LVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPD 141
Query: 631 ETYADIGGLD 660
TY +GGL+
Sbjct: 142 STYEMVGGLE 151
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 52.8 bits (121), Expect = 4e-08
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
Frame = +1
Query: 280 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDD----LRGTPMSVGNLEEIIDDNH 447
LE+ K YLL E+ + L+ + ++ K +D L+ +G + + +D
Sbjct: 8 LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSER 67
Query: 448 AIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAP 627
IV S G + V + VD+ L G V L+ ++ +L + DP+V M +E
Sbjct: 68 FIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPG 127
Query: 628 QETYADIGGLD 660
++A +GGL+
Sbjct: 128 DISFAGVGGLN 138
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 39.5 bits (88), Expect = 4e-04
Identities = 21/77 (27%), Positives = 39/77 (50%)
Frame = +1
Query: 424 EEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVS 603
E+ + N +++ ++ VS+ V +E G V + +A+ L DP V+
Sbjct: 107 EQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVT 166
Query: 604 VMKLEKAPQETYADIGG 654
+M++E+ P TY D+GG
Sbjct: 167 MMQVEEKPDVTYGDVGG 183
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.7 bits (66), Expect = 0.20
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +1
Query: 262 RLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 441
R KLLKLE L+ ++E + + E K + E+ R + LR + + NL E+ID+
Sbjct: 664 RTKLLKLEESNKSLIKKQEDVDSLE--KNIQTLKEDLRKSEEALRFSKLEAKNLREVIDN 721
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 29.5 bits (63), Expect = 0.45
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 247 PHTRCRLKLLKLERIKDYLLM 309
PHT RLK K +IKDYL M
Sbjct: 55 PHTAIRLKERKANKIKDYLTM 75
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 28.7 bits (61), Expect = 0.79
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 169 PIPTRVGKKKRKAKGPDAALK 231
PIP+R G++KRK +GP +K
Sbjct: 208 PIPSRRGRRKRKMRGPILPVK 228
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 310 EEEFIRNQERLKPQEEKIEEERSKVDDLRGTPM 408
EE+ I ++E + EE++EEE + +D P+
Sbjct: 65 EEDIIDDEESAQVDEEELEEEEEEEEDATPEPV 97
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 4.2
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 331 QERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVG-SEHYVSILSFVD 507
Q+R K EE + E+ ++ L+ S + EE+ + + V S+HY +L ++
Sbjct: 1749 QKRRKELEEFMSSEQERIGFLKSQLESNNDSEEVRQEYEELTKRIVTLSDHY-RLLEYLL 1807
Query: 508 KDQLEPGCS 534
KD E CS
Sbjct: 1808 KD--ESSCS 1814
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 177 YTSW*KEKES*GTRCGSQASASHASYKMSTQVVKTRKNKRLFVDGRGVHP*SRTLEA-TG 353
Y + +EK+ C S A +++ Q +KNK D +H SR LE+ G
Sbjct: 151 YLTLSREKQDQAIACVSDTVIPEAKWRIRVQTRFLKKNKSSLFDNPTIH--SRQLESMAG 208
Query: 354 RE 359
R+
Sbjct: 209 RK 210
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 277 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLR---GTPMSVGNLEEIIDDNH 447
KL + D MEEEF+ + + + EK SK L+ + + G L+E++ +N
Sbjct: 166 KLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSYLKENLKSELRKGRLDELMCENT 225
Query: 448 AI 453
A+
Sbjct: 226 AL 227
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +1
Query: 232 LPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMS 411
L VT + LK + ++ DY E++ + + +K E E E S +G P S
Sbjct: 408 LSTVTYDNKDSLKNMN-SKLVDYFQWREQYRKMSKSIKKPEPSKEREASNTTSRKGVPPS 466
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 268 KLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKV 384
K+L+ +R+ M E IRN K Q+E I ++ +++
Sbjct: 1190 KILRYQRLTKEYEMRAEQIRNDYAAKCQDEPIPDDEARL 1228
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 636 GFLWSLFKLHD*HHGIRVITQ 574
GF W+L + H+ HH +++ Q
Sbjct: 535 GFAWTLVQSHEGHHFSKLVKQ 555
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 9.7
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 277 KLERIKDYLLMEEEFIRNQERLKPQEEKIE-EERSKVDDLRGTPMSVGNLEEIIDDNHAI 453
K + IK +L EE+ N+E + EE E EE V+D + ++ID +A
Sbjct: 358 KYDAIKHEILGEEDDDENEEDEEDSEETSESEEDESVNDEK---------PQVIDQTNAS 408
Query: 454 VSTSVGSEHYVSILSFVDKDQ 516
+ ++ Y++I+S VD ++
Sbjct: 409 L-VNLRKSIYLTIMSSVDFEE 428
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 283 ERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 441
E+ + L +EE + + ++ EE S+ ++L G N EE+ D+
Sbjct: 59 EQADELELSDEELVALESSSDEEDGNAEENLSENEELSGKKKDAVNEEELYDN 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,347
Number of Sequences: 5004
Number of extensions: 43270
Number of successful extensions: 142
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -