Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt9n19
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0535 + 4208410-4208661,4209529-4209627,4210125-4210265,421... 190 1e-48
04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403 46 3e-05
02_05_0689 - 30937621-30937665,30938143-30938208,30938303-309383... 44 1e-04
06_01_0981 + 7613381-7614086,7614203-7614282,7614883-7614960,761... 40 0.002
08_02_0242 - 14701116-14702666 29 2.3
09_02_0181 - 5425833-5426527,5426667-5429397 28 7.1
03_02_0713 + 10615886-10616650 28 7.1
08_01_0724 - 6426263-6426514,6428511-6428742,6429081-6429400,643... 27 9.4
03_01_0203 - 1610124-1610154,1610244-1610419,1610490-1611124,161... 27 9.4
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 27 9.4
>12_01_0535 +
4208410-4208661,4209529-4209627,4210125-4210265,
4210378-4210560,4210664-4210821,4210905-4211004,
4211085-4211196,4211241-4211419,4211489-4211674,
4211762-4211929
Length = 525
Score = 190 bits (462), Expect = 1e-48
Identities = 87/170 (51%), Positives = 117/170 (68%)
Frame = +2
Query: 125 EFPGARAPYVSEMKFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQL 304
+FPG + +V+EM F E+ + I YRV+D++G+ I + + K + MY M L
Sbjct: 121 DFPGGKVSFVAEMNFLPESQRDRINCYRVLDDDGRTISGSRFQEVSKELALKMYNEMATL 180
Query: 305 SHMDKILYESQRQGRISFYMTNYGEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVT 484
MD I +E+QRQGRISFY+T++GEE I+I SA+AL+ D+V QYRE GV L+RG T+
Sbjct: 181 QVMDTIFFEAQRQGRISFYLTSHGEEAINIASAAALTIDDIVLPQYREPGVLLWRGFTLQ 240
Query: 485 ELVNQCYGNCEDPGKGRQMPVHYGSKHHNMVTISSPLGTQMPQAVGAAYA 634
E NQC+GN D GKGRQMP+HYGS N T+SSP+ TQ+P AVGAAY+
Sbjct: 241 EFANQCFGNKLDYGKGRQMPIHYGSNRLNYFTVSSPIATQLPHAVGAAYS 290
>04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403
Length = 425
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Frame = +2
Query: 275 INMYKTMVQLSHMDKILYESQRQGRISFYMTNY-GEEGIHIGSASALSPKDLVFSQYREV 451
+ +Y+ MV + + + +G++ ++ Y G+E + G L+ D V S YR+
Sbjct: 79 LELYEDMVLGRIFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLNQADCVVSTYRDH 138
Query: 452 GVFLYRGMTVTELVNQCYGNCEDPGKGRQMPVHYGSKHHNMVTISSPLGTQMPQAVGAAY 631
L +G+ ++ + +G +G+ +H S+ HN++ + +G +P A GAA+
Sbjct: 139 VHALSKGVPARSVMAELFGKATGCCRGQGGSMHMFSEPHNLLGGFAFIGEGIPVATGAAF 198
Query: 632 A 634
A
Sbjct: 199 A 199
>02_05_0689 -
30937621-30937665,30938143-30938208,30938303-30938356,
30938489-30938560,30938648-30938743,30939883-30939960,
30940485-30940564,30940662-30941343
Length = 390
Score = 43.6 bits (98), Expect = 1e-04
Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 3/154 (1%)
Frame = +2
Query: 182 SYEPIPIYRVMDNNGQIIDK-NEEPNLDKATLINMYKTMVQLSHMDKILYESQRQGRI-- 352
S P+ I + I+D + + A L+ ++ M + M+ I +S + ++
Sbjct: 29 STAPLTIETSVPFTSHIVDPPSRDVTTTPAELLTFFRDMSVMRRME-IAADSLYKAKLIR 87
Query: 353 SFYMTNYGEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVTELVNQCYGNCEDPGKG 532
F G+E + +G +A++ D + + YR+ +L RG + + G +G
Sbjct: 88 GFCHLYDGQEAVAVGMEAAITRSDSIITAYRDHCTYLARGGDLVSAFAELMGRQAGCSRG 147
Query: 533 RQMPVHYGSKHHNMVTISSPLGTQMPQAVGAAYA 634
+ +H+ K N +G Q+P G A+A
Sbjct: 148 KGGSMHFYKKDANFYGGHGIVGAQVPLGCGLAFA 181
>06_01_0981 +
7613381-7614086,7614203-7614282,7614883-7614960,
7615166-7615261,7615370-7615441,7615676-7615729,
7615819-7615884,7616291-7616335
Length = 398
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/87 (25%), Positives = 39/87 (44%)
Frame = +2
Query: 374 GEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVTELVNQCYGNCEDPGKGRQMPVHY 553
G+E + +G +A + D + + YR+ +L RG + L + G +G+ +H
Sbjct: 103 GQEAVAVGMEAATTRADAIITAYRDHCAYLARGGDLAALFAELMGRRGGCSRGKGGSMHL 162
Query: 554 GSKHHNMVTISSPLGTQMPQAVGAAYA 634
K N +G Q+P G A+A
Sbjct: 163 YKKDANFYGGHGIVGAQVPLGCGLAFA 189
>08_02_0242 - 14701116-14702666
Length = 516
Score = 29.5 bits (63), Expect = 2.3
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Frame = -2
Query: 288 LYMLISVALSKFGSSFLSMICPLLSITR*IGIGS*LVSLK----NFISLTYGALAPGNSA 121
+++LIS A +K ++ L + CP ++ + + S + +L+ + +S +YG P +
Sbjct: 213 VHLLISAAKTKEETAVLRLRCPTVTTLVLVAVTSRIEALQLDAPSLVSFSYGG-HPMAIS 271
Query: 120 ILPPPFCAVSGLVRVDKSLAARRKAFNLTKLAPVFNAILS 1
+ PPP A LV VD S R +F K PV + S
Sbjct: 272 LAPPP--ANLALVDVDIS----RPSFFTWKYEPVCRVLRS 305
>09_02_0181 - 5425833-5426527,5426667-5429397
Length = 1141
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 177 SLKNFISLTYGALAPGNSAILPPPFCAVSGLVRVD 73
+LKNF +LTY L + +P CA++ L +D
Sbjct: 551 TLKNFTALTYLDLCSNSLTNIPGEICALANLEYLD 585
>03_02_0713 + 10615886-10616650
Length = 254
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -2
Query: 162 ISLTYGALAPGNSAILPP-PFCAVSGLVRVDKSLAARRKAFNLTKLAPVFNAI 7
+SL LA +A PP P A + L + S+ RKAF L K NA+
Sbjct: 47 VSLYAARLALALAAGQPPLPHAATARLRSFESSVGLSRKAFRLGKFVQSINAL 99
>08_01_0724 -
6426263-6426514,6428511-6428742,6429081-6429400,
6433071-6433163,6433188-6433354,6433432-6433846
Length = 492
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Frame = +1
Query: 481 DGTCEPVLRKLRGSGERETDAG------PLRKQAPQHG 576
DGT E + + +G+GE E DAG P+++ AP G
Sbjct: 438 DGTVEGIQEEGQGAGEAEQDAGGEEGIVPIQETAPSIG 475
>03_01_0203 -
1610124-1610154,1610244-1610419,1610490-1611124,
1611201-1611408
Length = 349
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -3
Query: 569 CGACFRNGPASVSLSPDP---RSFRNTGSQVP 483
CGAC+R+ P S ++ P P R F + S +P
Sbjct: 17 CGACYRS-PPSPAIKPSPLGLRPFTKSSSSLP 47
>01_06_1742 -
39585879-39585994,39586089-39586238,39586288-39586375,
39586479-39586640,39586753-39586877,39586992-39587030,
39587290-39587476,39587643-39587713,39589371-39589564,
39589656-39589767,39589899-39590082,39590177-39590503,
39590780-39591061,39591148-39591621,39591730-39591813,
39591850-39591939,39592024-39592247,39592503-39592600,
39592679-39593169,39593249-39593520,39594266-39594522,
39594672-39594890,39595007-39595167,39595249-39595441,
39595528-39595633,39595947-39596121,39596404-39596556,
39596663-39596794,39597120-39597184,39597754-39597819,
39598433-39598511,39598587-39598767,39598864-39598976
Length = 1889
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 311 MDKILYESQRQGRISF-YMTNYGEEGIHIGSASALSPKDL 427
M K +S R G+++ + T+ EEGIH+ S + DL
Sbjct: 409 MQKDTLDSFRSGKVNLLFTTDVAEEGIHVPECSCVIRFDL 448
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,650,807
Number of Sequences: 37544
Number of extensions: 399755
Number of successful extensions: 970
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -