Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9n17
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    25   5.7  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    25   5.7  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    25   5.7  

>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 275 HPSPKWSTSVYFSVSRIPVHYSFTPLHISKFTTNNTQIINIPGV 144
           HPS   STS   S + +P      P+H S +  NN   + +P +
Sbjct: 117 HPSQTKSTSQPPS-NHLPAFQQIPPIHQSAYPQNNVAEVLMPPI 159


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 237 RKINRGRPFRRWVDDIKAVAGS---TWTRTAENRSLWRQLEEAY 359
           + +   RPFRRW+ +++ V+ +    W   +    L +Q  + Y
Sbjct: 263 KNVRVDRPFRRWIIELEDVSRNVFWVWNHDSNVIDLEKQYNQVY 306


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 351 PPTASISFYFQLFWSMCFPQLP*CRPPIS*MVY 253
           PP +  S +  ++WS   P+L    P IS  +Y
Sbjct: 135 PPLSPYSSFSSIYWSSTVPELALRNPNISVALY 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,868,007
Number of Sequences: 5004
Number of extensions: 36850
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)