Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9n17
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0315 - 2111095-2111241,2111496-2111579,2111803-2111883,211...    37   0.012
01_03_0184 + 13560830-13562981,13563604-13564088                       32   0.27 
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119...    28   4.4  
12_02_0095 + 13559997-13560232,13561295-13561683,13562092-135623...    28   5.8  
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508...    27   7.6  

>02_01_0315 -
           2111095-2111241,2111496-2111579,2111803-2111883,
           2112133-2112310,2112447-2112623,2112688-2112734,
           2112845-2112901,2113339-2113437,2113696-2113818,
           2113895-2114017,2114241-2114264,2115096-2115209,
           2115315-2115503,2115691-2115857,2116846-2116930,
           2117698-2117778,2118239-2118424,2119266-2119314,
           2119777-2119810,2120087-2120153,2120198-2120419
          Length = 777

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -1

Query: 281 VVHPSPKWSTSVYFSVSRIPVHYSFTPLH-ISKFTTNNTQIINIPGV 144
           + HP PK ST V+  +S++   Y F P + I KFT +N   + IPG+
Sbjct: 94  IFHPKPKKSTLVWIGLSQLT--YLFIPTNPILKFTRSNPSKLEIPGI 138


>01_03_0184 + 13560830-13562981,13563604-13564088
          Length = 878

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -2

Query: 334 KLLFSAVLVHVLPATALMSSTHLLNGLPRFIFLSLGYQYIIVLHH 200
           +L+F+A +V +L  + + S  H  +G  RF+FL     Y+ V+ +
Sbjct: 32  QLIFAAAVVTILVGSGVYSRRHRRHGFARFVFLGASTLYLPVVSY 76


>11_06_0458 +
           23808402-23808469,23808800-23809684,23810011-23811961,
           23812210-23812285,23813064-23813072,23813243-23813335,
           23813578-23813581,23813780-23814703,23814926-23815909,
           23816073-23816118,23816376-23816951,23817253-23817798,
           23817820-23818416
          Length = 2252

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +3

Query: 204 CKTIMYWYPRDRKINRGRPFRRWVDD--IKAVAGSTWTRTAE 323
           C   +  +P D  INR    RRWV +  IKA  G T+    E
Sbjct: 472 CLLYLSMFPEDYVINRDYLVRRWVAEGFIKANGGRTFEEEGE 513


>12_02_0095 +
           13559997-13560232,13561295-13561683,13562092-13562387,
           13562475-13563361,13563440-13563562,13563693-13563981,
           13564211-13564249
          Length = 752

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -1

Query: 269 SPKWSTSVYFSVSRIPVH-YSFTPLHIS 189
           +PKWST  Y + SRI  + Y +TP+H++
Sbjct: 653 TPKWSTCHYLN-SRIDKNAYDWTPIHLA 679


>04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880,
            16552038-16552076,16553151-16553272,16553531-16553677,
            16554097-16554186,16554274-16554398,16554567-16554772,
            16554951-16555075,16555528-16555722,16556295-16556337,
            16556762-16557267,16558198-16558570,16559772-16560062,
            16560132-16561101,16561196-16561892,16562378-16562658,
            16562731-16563400,16563860-16564034,16565103-16565659
          Length = 2204

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -1

Query: 173  NTQIINIPGVSCCVMVLLAICEYYNK 96
            +++  N+    C ++V+L +C +YN+
Sbjct: 1386 SSEDFNLASCQCAILVILYVCSFYNE 1411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,902,572
Number of Sequences: 37544
Number of extensions: 232322
Number of successful extensions: 648
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)