Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9n17
         (554 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    31   0.74 
Z38112-3|CAA86230.2|  333|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z79602-1|CAB01888.3|  508|Caenorhabditis elegans Hypothetical pr...    28   5.2  

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
 Frame = +3

Query: 201 WCKTIMYWYPRDRKINRGRPFRRWVDDIK---------AVAGSTWTRTAENRSLWRQLEE 353
           W   +  W PRD K   GRP  RW D ++               W+  A++R  W+ +  
Sbjct: 137 WTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTRDAFGQVKQLWSTQAKDRKAWKAVIR 196

Query: 354 A 356
           A
Sbjct: 197 A 197


>Z38112-3|CAA86230.2|  333|Caenorhabditis elegans Hypothetical
           protein E03A3.5 protein.
          Length = 333

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = -1

Query: 290 CLNVVHPSPKWSTSVYFSVSRIPVHYSFTPLHISKFTTNNTQIINIPG 147
           CL  ++P   +S ++YFS  +   +Y F  ++    T    +I+ + G
Sbjct: 132 CLYYIYPPEGFSVNIYFSKIKTEKNYDFVEIYEKNSTLYPDRIVGLSG 179


>Z79602-1|CAB01888.3|  508|Caenorhabditis elegans Hypothetical
           protein K09E9.1 protein.
          Length = 508

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 209 FTPLHISKFTTNNTQIINIPGVSCCVMVLLAICEYYN 99
           FTP  +++F T     I+  G+ C   +++   +YY+
Sbjct: 368 FTPFFLNRFLTKRAIAISSVGLCCLAALMILPIQYYD 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,403,736
Number of Sequences: 27780
Number of extensions: 211894
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)