Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt9n17
         (554 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   1.6  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.4  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 372 VYYRHRPPPTASISFYFQLFWSMCFPQLP 286
           V  ++RP P A I     + W M F +LP
Sbjct: 225 VIKQNRPTPAADIYSLGIVAWQMLFRKLP 253


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 207 YTITHFKIYHK*YTNNKYSGCKLLCYGIIS 118
           Y   ++   +  Y NN Y+  K L Y II+
Sbjct: 329 YNNNNYNNNYNNYNNNNYNNYKKLYYNIIN 358


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 171 YTNNKYSGCKLLCYGIIS 118
           Y NN  + CK L Y II+
Sbjct: 343 YNNNYNNNCKKLYYNIIN 360


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 234 DRKINRGRPFRRWVDDIKAVAGSTW 308
           D    + + FR+W  D  AVA  T+
Sbjct: 645 DEMCGQEQAFRKWAADTFAVACETF 669


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,736
Number of Sequences: 438
Number of extensions: 2978
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)